RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ISG20L2Q9H9L3 353 aaKnown RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 CHCHD3Q9NX63 227 aaKnown RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 NCOA6Q14686 2063 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 DAPL1A0PJW8 107 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 SCG5P05408 212 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 GTF2A1P52655 376 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 ACTC1P68032 377 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 ACTA1P68133 377 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 SSX1Q16384 188 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 PLEKHN1Q494U1 663 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 THEM4Q5T1C6 240 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 C19orf48Q6RUI8 117 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 SLC16A9Q7RTY1 509 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 RNF128Q8TEB7 428 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 GATAD2BQ8WXI9 593 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 ISOC1Q96CN7 298 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 FOXN4Q96NZ1 517 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 PAQR5Q9NXK6 330 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 ZMIZ1Q9ULJ6 1067 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 TP53TG5Q9Y2B4 290 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 COA3Q9Y2R0 106 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 CAB39Q9Y376 341 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 PRR32B1ATL7 298 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 CENPBD1B2RD01 187 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 HSMCR30P0CW71 290 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 GAAP10253 952 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 RGS6P49758 472 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 RPS3AP61247 264 aaKnown RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 MLLT11Q13015 90 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 CARD17Q5XLA6 110 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 LRFN4Q6PJG9 635 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 SLC25A47Q6Q0C1 308 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 CDC20BQ86Y33 519 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ANKRD13BQ86YJ7 626 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ERI1Q8IV48 349 aaKnown RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 KLHL36Q8N4N3 616 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ZNF420Q8TAQ5 688 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 SPRYD4Q8WW59 207 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 TMEM54Q969K7 222 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 EXO5Q9H790 373 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 RSL24D1Q9UHA3 163 aaKnown RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 FOXD3Q9UJU5 478 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 KLHDC2Q9Y2U9 406 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 IGKV3D-15A0A087WSY6 115 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ZNF726A6NNF4 738 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ZNF701M0R085 212 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 AQP8O94778 261 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 CD36P16671 472 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 CENPAP49450 140 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 SELENOPP49908 381 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ZNF133P52736 654 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 BLVRAP53004 296 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 CLRN1P58418 232 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 RASGEF1BQ0VAM2 473 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 PHYHD1Q5SRE7 291 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 OTPQ5XKR4 325 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ATCAYQ86WG3 371 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 SLC26A10Q8NG04 563 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 FNDC9Q8TBE3 224 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 MCHR2Q969V1 340 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ZNF775Q96BV0 537 aaPredicted RBP12.66□□□□□ -0.38
USP39-220ENST00000613444 RBP7Q96R05 134 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 PRDM14Q9GZV8 571 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ISYNA1Q9NPH2 558 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 ENPP5Q9UJA9 477 aa12.66□□□□□ -0.38
USP39-220ENST00000613444 AQP7O14520 342 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 KHDRBS3O75525 346 aaKnown RBP12.65□□□□□ -0.38
USP39-220ENST00000613444 MPZL1O95297 269 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 RPS27P42677 84 aaKnown RBP12.65□□□□□ -0.38
USP39-220ENST00000613444 TMBIM6P55061 237 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 CXADRP78310 365 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 GLO1Q04760 184 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 ACSM1Q08AH1 577 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 TSTQ16762 297 aaKnown RBP12.65□□□□□ -0.38
USP39-220ENST00000613444 CNPY1Q3B7I2 92 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 CDONQ4KMG0 1287 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 ZNF684Q5T5D7 378 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 DNM1P34Q6PK57 102 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 UNQ6494/PRO21346Q6UXR6 183 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 INTS14Q96SY0 518 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 YIPF3Q9GZM5 350 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 GLTPQ9NZD2 209 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 RCE1Q9Y256 329 aa12.65□□□□□ -0.38
USP39-220ENST00000613444 CCDC160A6NGH7 325 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 TRIM64BA6NI03 449 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 H3BMQ9 156 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 MAGEB4O15481 346 aaPredicted RBP12.64□□□□□ -0.39
USP39-220ENST00000613444 HSF2Q03933 536 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 INAQ16352 499 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 CTF1Q16619 201 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 MEP1BQ16820 701 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 PCK2Q16822 640 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 LINC00303Q3SY05 128 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 DPY19L4Q7Z388 723 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 NSMAFQ92636 917 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 C12orf43Q96C57 262 aaKnown RBP12.64□□□□□ -0.39
USP39-220ENST00000613444 TTTY10Q9BZA0 68 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 MAP1BP46821 2468 aaKnown RBP12.64□□□□□ -0.39
USP39-220ENST00000613444 ARHGAP21Q5T5U3 1957 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 TLN1Q9Y490 2541 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms