RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PLGP00747 810 aaPredicted RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 BLOC1S1P78537 153 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 SFTPA2Q8IWL1 248 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 GABRG1Q8N1C3 465 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 EID2Q8N6I1 236 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 RNF166Q96A37 237 aaPredicted RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 TREM1Q9NP99 234 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 PURGQ9UJV8 347 aaKnown RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 HEATR5AQ86XA9 2040 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 RPA2P15927 270 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 CD34P28906 385 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 MRPS10P82664 201 aaKnown RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 MCATQ8IVS2 390 aaKnown RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 OR4C3Q8NH37 302 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 PPP1R1CQ8WVI7 109 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 MOGAT1Q96PD6 335 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 A0A1B0GW55 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 OR6C76A6NM76 312 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 H0Y8X5 98 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 UPK3AO75631 287 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 AQP8O94778 261 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 CSTAP01040 98 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 APODP05090 189 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4L2P0CJ85 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4L3P0CJ86 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4L4P0CJ87 422 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4L5P0CJ88 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4L6P0CJ89 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4L7P0CJ90 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 MGMTP16455 207 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 RPS4Y1P22090 263 aaKnown RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 CALCRP30988 508 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 C3orf33Q6P1S2 294 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 PATE1Q8WXA2 126 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 TSACCQ96A04 125 aaPredicted RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 MRPL48Q96GC5 212 aaKnown RBP16.64■□□□□ 0.25
UPF1-210ENST00000600689 SLC25A32Q9H2D1 315 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 DUX4Q9UBX2 424 aa16.64■□□□□ 0.25
UPF1-210ENST00000600689 C11orf98E9PRG8 122 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 GLCEO94923 617 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 AKR7A3O95154 331 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 FARS2O95363 451 aaKnown RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 DCNP07585 359 aaKnown RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 CTSBP07858 339 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 CTAG1AP78358 180 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 LINC01590Q5TEZ4 76 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 USP53Q70EK8 1073 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 FAM3DQ96BQ1 224 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 TRIM2Q9C040 744 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 COMMD4Q9H0A8 199 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 SCPEP1Q9HB40 452 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 DUSP22Q9NRW4 184 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 SLC22A7Q9Y694 548 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 A0A1W2PQU0 124 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 ZNF705EA8MWA4 302 aaPredicted RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 TACSTD2P09758 323 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 UBBP0CG47 229 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 UBCP0CG48 685 aaKnown RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 RPS27AP62979 156 aaKnown RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 UBA52P62987 128 aaKnown RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 EIF2B5Q13144 721 aaKnown RBP16.63■□□□□ 0.25
UPF1-210ENST00000600689 PABPC1L2AQ5JQF8 200 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 ULK3Q6PHR2 472 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 OR2G2Q8NGZ5 317 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 RAB11FIP5Q9BXF6 653 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 OBP2AQ9NY56 170 aa16.63■□□□□ 0.25
UPF1-210ENST00000600689 OR14I1A6ND48 311 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 K7EQS6 105 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 ABCD4O14678 606 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 RDH16O75452 317 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 NFYBP25208 207 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 DHRS2Q13268 280 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 FHL5Q5TD97 284 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 PARGQ86W56 976 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 LILRB1Q8NHL6 650 aaPredicted RBP16.62■□□□□ 0.25
UPF1-210ENST00000600689 SERINC2Q96SA4 455 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 SYT4Q9H2B2 425 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 SLC22A11Q9NSA0 550 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 KCNG2Q9UJ96 466 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 TMEM235A6NFC5 223 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 GP1BAP07359 652 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 ACTR1BP42025 376 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 CBX5P45973 191 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 ACTR1AP61163 376 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 SNTB1Q13884 538 aaKnown RBP16.62■□□□□ 0.25
UPF1-210ENST00000600689 FCRL6Q6DN72 434 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 JMJD6Q6NYC1 403 aaPredicted RBP16.62■□□□□ 0.25
UPF1-210ENST00000600689 MDGA2Q7Z553 956 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 THAP6Q8TBB0 222 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 CMKLR1Q99788 373 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 FANCFQ9NPI8 374 aa16.62■□□□□ 0.25
UPF1-210ENST00000600689 AGPAT2O15120 278 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 C5AR1P21730 350 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 CAPZA2P47755 286 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 PPIAP62937 165 aaKnown RBP16.61■□□□□ 0.25
UPF1-210ENST00000600689 PSG6Q00889 435 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 PRICKLE4Q2TBC4 344 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 SLC22A6Q4U2R8 563 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 GLT8D1Q68CQ7 371 aa16.61■□□□□ 0.25
UPF1-210ENST00000600689 BPIFB2Q8N4F0 458 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms