RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MDP1Q86V88 176 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 SLC22A24Q8N4F4 322 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 LINC00471Q8N535 108 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 DGCR6LQ9BY27 220 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 PLA2G12AQ9BZM1 189 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 EGLN3Q9H6Z9 239 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 REEP1Q9H902 201 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 POFUT2Q9Y2G5 429 aa16.97■□□□□ 0.31
SHKBP1-221ENST00000599833 STAMBPO95630 424 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 WNT11O96014 354 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 SCG5P05408 212 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 IGFBP1P08833 259 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 CECR9P0C854 216 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 DANCRP0C864 163 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 APEHP13798 732 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 CBR1P16152 277 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 HOXB6P17509 224 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 RPL4P36578 427 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 IFNGR2P38484 337 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 CDKN2AP42771 156 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 GK3PQ14409 553 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 NRN1LQ496H8 165 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 CCDC121Q6ZUS5 278 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 ZNF584Q8IVC4 421 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 HS3ST5Q8IZT8 346 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 AQP11Q8NBQ7 271 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 AKAP1Q92667 903 aaKnown RBP eCLIP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 MBD6Q96DN6 1003 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 SAMD8Q96LT4 415 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 SLC38A2Q96QD8 506 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 NIPSNAP1Q9BPW8 284 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 UBTD1Q9HAC8 227 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 IL20Q9NYY1 176 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 VSX1Q9NZR4 365 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 IER3IP1Q9Y5U9 82 aa16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 MAGED1Q9Y5V3 778 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-221ENST00000599833 ARRDC5A6NEK1 342 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 A6NIZ1 184 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 E7EQL1 145 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 BHLHE40O14503 412 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ARPC3O15145 178 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 PPP1R3DO95685 299 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 RAF1P04049 648 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 MMP7P09237 267 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 PATE4P0C8F1 98 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ZNF14P17017 642 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 CALCRP30988 508 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 HOXC12P31275 282 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 CDAP32320 146 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 UBE2NP61088 152 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 RAP1BP61224 184 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 RAP1AP62834 184 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 MRPS34P82930 218 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 KRR1Q13601 381 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ETFDHQ16134 617 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 PGGHGQ32M88 737 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ZNF362Q5T0B9 420 aaPredicted RBP16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 THEM4Q5T1C6 240 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 GPR139Q6DWJ6 353 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 KLHL17Q6TDP4 642 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ZNF611Q8N823 705 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 OR10G2Q8NGC3 310 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ZNF570Q96NI8 536 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 DDOQ99489 341 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 SH3GL3Q99963 347 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 ARMC1Q9NVT9 282 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 REV1Q9UBZ9 1251 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 CDH10Q9Y6N8 788 aa16.95■□□□□ 0.3
SHKBP1-221ENST00000599833 USF3Q68DE3 2245 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 PRSS37A4D1T9 235 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 ARHGEF9O43307 516 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 CTLA4P16410 223 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 PAX7P23759 505 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 CD47Q08722 323 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 DBPQ10586 325 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 C1orf146Q5VVC0 180 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 CD300LDQ6UXZ3 194 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 RASSF6Q6ZTQ3 369 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 CCDC36Q8IYA8 594 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 CXXC4Q9H2H0 198 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 GRHPRQ9UBQ7 328 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 DNAJB9Q9UBS3 223 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 ARID1AO14497 2285 aa16.94■□□□□ 0.3
SHKBP1-221ENST00000599833 ATP6V1G2-DDX39BF2Z307 99 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 DCTN6O00399 190 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 EBAG9O00559 213 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 SOCS2O14508 198 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 AHCYL1O43865 530 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 TIPRLO75663 272 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 SOD3P08294 240 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 NAAAQ02083 359 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 C20orf204Q6ZNR8 217 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 KRTAP1-3Q8IUG1 177 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 OR4Q3Q8NH05 313 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 NSMAFQ92636 917 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 FEVQ99581 238 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 MOKQ9UQ07 419 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 MGAT4BQ9UQ53 548 aa16.93■□□□□ 0.3
SHKBP1-221ENST00000599833 MGRN1O60291 552 aa16.92■□□□□ 0.3
SHKBP1-221ENST00000599833 CD8AP01732 235 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms