RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CPT1CQ8TCG5 803 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 NSMAFQ92636 917 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 MCHR2Q969V1 340 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 SIGLEC11Q96RL6 698 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 CNN2Q99439 309 aaKnown RBP12.98□□□□□ -0.33
VRK3-212ENST00000596814 TM9SF2Q99805 663 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 ULBP2Q9BZM5 246 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 ADGRL4Q9HBW9 690 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 SNX5Q9Y5X3 404 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 MBD3L4A6NDZ8 208 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 MBD3L3A6NE82 208 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 MBD3L5A6NJ08 208 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 SLC19A2O60779 497 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 MRPS14O60783 128 aaKnown RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 FADS2O95864 444 aaKnown RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 MT-ND2P03891 347 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 MRPL3P09001 348 aaKnown RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 HOXD4P09016 255 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 QDPRP09417 244 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 ATP6V1B1P15313 513 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 BLVRAP53004 296 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 GLO1Q04760 184 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 NFATC3Q12968 1075 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 PHYHD1Q5SRE7 291 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 SLC25A47Q6Q0C1 308 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 LYPD4Q6UWN0 246 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 B3GNT6Q6ZMB0 384 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 GPR137CQ8N3F9 429 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 MBD3L2Q8NHZ7 208 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 TMEM80Q96HE8 168 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 MRPS26Q9BYN8 205 aaKnown RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 SLCO5A1Q9H2Y9 848 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 TP63Q9H3D4 680 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 FGF20Q9NP95 211 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 B3GAT2Q9NPZ5 323 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 SCOCQ9UIL1 159 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 EXOGQ9Y2C4 368 aaKnown RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 ZNF835Q9Y2P0 537 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 COA3Q9Y2R0 106 aaPredicted RBP12.97□□□□□ -0.33
VRK3-212ENST00000596814 FAM215AQ9Y5M1 114 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 COMMD3-BMI1R4GMX3 469 aa12.97□□□□□ -0.33
VRK3-212ENST00000596814 SELENOFO60613 162 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 HLA-DQA2P01906 255 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 SBK2P0C263 348 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 C21orf33P30042 268 aaPredicted RBP12.96□□□□□ -0.33
VRK3-212ENST00000596814 NAA10P41227 235 aaPredicted RBP12.96□□□□□ -0.33
VRK3-212ENST00000596814 ZNF133P52736 654 aaPredicted RBP12.96□□□□□ -0.33
VRK3-212ENST00000596814 MVKQ03426 396 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 C10orf128Q5T292 105 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 RTL6Q6ICC9 239 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 LRFN4Q6PJG9 635 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 NUFIP2Q7Z417 695 aaKnown RBP12.96□□□□□ -0.33
VRK3-212ENST00000596814 GCNT2Q8N0V5 402 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 ZNF511Q8NB15 262 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 APH1AQ96BI3 265 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 FOXN4Q96NZ1 517 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 ALKBH3Q96Q83 286 aaPredicted RBP12.96□□□□□ -0.33
VRK3-212ENST00000596814 DIMT1Q9UNQ2 313 aaKnown RBP12.96□□□□□ -0.33
VRK3-212ENST00000596814 SHANK1Q9Y566 2161 aa12.96□□□□□ -0.33
VRK3-212ENST00000596814 TVP23AA6NH52 213 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 OR6C65A6NJZ3 312 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 UPK3AO75631 287 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 GPANK1O95872 356 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 ADRA2AP08913 450 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 DCKP27707 260 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 TUBA4AP68366 448 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 GUSBP1Q15486 140 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 RIPPLY2Q5TAB7 128 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 TMEM154Q6P9G4 183 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 SEM1Q6ZVN7 128 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 ERI1Q8IV48 349 aaKnown RBP12.96□□□□□ -0.34
VRK3-212ENST00000596814 GLB1L2Q8IW92 636 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 ZNF100Q8IYN0 542 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 LINC00470Q9BZP3 86 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 EMC9Q9Y3B6 208 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 PCDHGB1Q9Y5G3 927 aa12.96□□□□□ -0.34
VRK3-212ENST00000596814 CACNA1BQ00975 2339 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 A0A1W2PPL8 197 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 TRIM64CA6NLI5 447 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 J3QRE1 110 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 KRT33AO76009 404 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 IGHA1P01876 353 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 GAAP10253 952 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 MYL12AP19105 171 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 EDNRAP25101 427 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 PER3P56645 1201 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 ACTC1P68032 377 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 ACTA1P68133 377 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 SIRPAP78324 504 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 TSPO2Q5TGU0 170 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 FAM214BQ7L5A3 538 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 DOLPP1Q86YN1 238 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 TIGD4Q8IY51 512 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 SPARTQ8N0X7 666 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 SVOPQ8N4V2 548 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 ST6GALNAC3Q8NDV1 305 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 SLC26A10Q8NG04 563 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 OR10H4Q8NGA5 316 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 INTS14Q96SY0 518 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms