RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 COA3Q9Y2R0 106 aaPredicted RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 HRH3Q9Y5N1 445 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 A0A1W2PQD3 144 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 TIMM8AO60220 97 aaPredicted RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 APOC3P02656 99 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 SP1P08047 785 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 SDHAP31040 664 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 POLR2IP36954 125 aaKnown RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 CASP3P42574 277 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 GLP1RP43220 463 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 PRKCDQ05655 676 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 DUSP2Q05923 314 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 THEM4Q5T1C6 240 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ZNF620Q6ZNG0 422 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ZNF511Q8NB15 262 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 OR4F15Q8NGB8 312 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 LMF1Q96S06 567 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 TMEM246Q9BRR3 403 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 TMEM43Q9BTV4 400 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 TXNIPQ9H3M7 391 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 DNAJB12Q9NXW2 375 aaKnown RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 VNN3Q9NY84 501 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ZNF346Q9UL40 294 aaKnown RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 SURF4O15260 269 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ICMTO60725 284 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 RAD51DO75771 328 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 GLCEO94923 617 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 TMEM11P17152 192 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 DIO1P49895 249 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 LIMK1P53667 647 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 ZNF691Q5VV52 312 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 XKRXQ6PP77 449 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 C3P1Q6ZMU1 363 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 GPR155Q7Z3F1 870 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 WFDC8Q8IUA0 241 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 EXOSC3Q9NQT5 275 aaKnown RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 VSX1Q9NZR4 365 aaPredicted RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 ZNF230Q9UIE0 474 aaPredicted RBP8.91□□□□□ -0.98
LIG3-216ENST00000593099 PLEKHA6Q9Y2H5 1048 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 KCNIP3Q9Y2W7 256 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 HSPB11Q9Y547 144 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 CACNA1GO43497 2377 aa8.91□□□□□ -0.98
LIG3-216ENST00000593099 IGHV1-45A0A0A0MS14 117 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ZNF705EA8MWA4 302 aaPredicted RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 IFNA10P01566 189 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 CRYAAP02489 173 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 MAS1P04201 325 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 IFNA4P05014 189 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 CCL3P10147 92 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 RAB39AQ14964 217 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 OLFML2AQ68BL7 652 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 RHOUQ7L0Q8 258 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 LINC00346Q8IVM7 164 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 C9orf40Q8IXQ3 194 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 PAPD5Q8NDF8 572 aaKnown RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 C17orf47Q8NEP4 570 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ZNF721Q8TF20 911 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 NPRL2Q8WTW4 380 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 KISS1RQ969F8 398 aaPredicted RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 HRASLS5Q96KN8 279 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 C4orf36Q96KX1 117 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 BARD1Q99728 777 aaKnown RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 OR2B2Q9GZK3 357 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 MED29Q9NX70 200 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 DCAF16Q9NXF7 216 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 MUC6Q6W4X9 2439 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 SMIM30A4D0T7 59 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 OR8G3PP0DMU2 310 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ZNF35P13682 527 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 CD97P48960 835 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 C22orf42Q6IC83 251 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 CCDC54Q8NEL0 328 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 OR5D14Q8NGL3 314 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 CST11Q9H112 138 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 BABAM2Q9NXR7 383 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 LOC101059948A0A1B0GTJ6 334 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 TIAF1O95411 115 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 TGM6O95932 706 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ACTL6AO96019 429 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 CD3GP09693 182 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 SMIM10L1P0DMW3 83 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 RAB3AP20336 220 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 IDH3GP51553 393 aaPredicted RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 SNU13P55769 128 aaKnown RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 MAJINQ3KP22 176 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 MTFR2Q6P444 385 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.9□□□□□ -0.98
LIG3-216ENST00000593099 OR11L1Q8NGX0 322 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ADAMTS14Q8WXS8 1223 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 PIGCQ92535 297 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 ZG16BQ96DA0 208 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 SMIM10Q96HG1 83 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 HIPK2Q9H2X6 1198 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 LANCL2Q9NS86 450 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 STUB1Q9UNE7 303 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 WASF3Q9UPY6 502 aa8.9□□□□□ -0.98
LIG3-216ENST00000593099 SCN3AQ9NY46 2000 aa8.9□□□□□ -0.99
LIG3-216ENST00000593099 A0A0B4J2E0 115 aa8.9□□□□□ -0.99
LIG3-216ENST00000593099 A0A1B0GX12 115 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms