RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 COMMD4Q9H0A8 199 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 TMEM185BQ9H7F4 350 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 MRPL22Q9NWU5 206 aaKnown RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 ABI3Q9P2A4 366 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 B3GAT1Q9P2W7 334 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 COMMD3Q9UBI1 195 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 MRPS18CQ9Y3D5 142 aaKnown RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 hCG_2014768A0A024R1R8 64 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SMIM30A4D0T7 59 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 TMEM212A6NML5 194 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 PRR32B1ATL7 298 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 CDK2AP1O14519 115 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 PDCD5O14737 125 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 DNPH1O43598 174 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 ZIC3O60481 467 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 TMCC2O75069 709 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 NCR1O76036 304 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 AQP8O94778 261 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 VAMP5O95183 116 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 PTTG1O95997 202 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 IGHG1P01857 330 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SPARCP09486 303 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SFTPDP35247 375 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 P2RY4P51582 365 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 BIDP55957 195 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 CAV3P56539 151 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 CSNK2A1P68400 391 aaPredicted RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 HSD17B12Q53GQ0 312 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SFXN4Q6P4A7 337 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SLC26A10Q8NG04 563 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 OR5M1Q8NGP8 315 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 OR6X1Q8NH79 312 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SETD6Q8TBK2 473 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 RNF166Q96A37 237 aaPredicted RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 SLC25A44Q96H78 314 aaPredicted RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 JSRP1Q96MG2 331 aaPredicted RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 PDCD1LG2Q9BQ51 273 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 NAA11Q9BSU3 229 aaPredicted RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 PPIL3Q9H2H8 161 aaKnown RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 KCNG2Q9UJ96 466 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 COA3Q9Y2R0 106 aaPredicted RBP12.7□□□□□ -0.38
LIG3-205ENST00000585941 AHCTF1Q8WYP5 2266 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 DOCK10Q96BY6 2186 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 FREM3P0C091 2139 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 OTOGLQ3ZCN5 2332 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 A0A1W2PNR3 127 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 OR2M5A3KFT3 312 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 NOTOA8MTQ0 251 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 PSMD9O00233 223 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 DVL2O14641 736 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 TLX3O43711 291 aaPredicted RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 ZNF254O75437 659 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 RPP14O95059 124 aaKnown RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 ZFPL1O95159 310 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 ZNF43P17038 809 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 TCEA1P23193 301 aaKnown RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 CASRP41180 1078 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 CCR9P51686 369 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 NANOS3P60323 173 aaKnown RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 GPR85P60893 370 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 RAC1P63000 192 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 SLC17A1Q14916 467 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 PCK2Q16822 640 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 IDNKQ5T6J7 187 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 ZNF468Q5VIY5 522 aaPredicted RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 DEGS2Q6QHC5 323 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 MDGA2Q7Z553 956 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 SLC22A16Q86VW1 577 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 GLB1L2Q8IW92 636 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 OR2G2Q8NGZ5 317 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 ADAMTS17Q8TE56 1095 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 KCNE4Q8WWG9 221 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 PSMF1Q92530 271 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 RELTQ969Z4 430 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 THOC3Q96J01 351 aaKnown RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 TXNDC15Q96J42 360 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 PRRX2Q99811 253 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 MRPL13Q9BYD1 178 aaKnown RBP12.69□□□□□ -0.38
LIG3-205ENST00000585941 SRRQ9GZT4 340 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 ZCCHC4Q9H5U6 513 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 MED29Q9NX70 200 aa12.69□□□□□ -0.38
LIG3-205ENST00000585941 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 TRAF3IP2O43734 574 aaPredicted RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 APOA1P02647 267 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 RAF1P04049 648 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 EVX1P49640 407 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 RIDAP52758 137 aaKnown RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 CLRN1P58418 232 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 H3F3AP84243 136 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 FOXK1P85037 733 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 CDC20Q12834 499 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 AIMP2Q13155 320 aaKnown RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 EIF2B1Q14232 305 aaKnown RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 ZNF79Q15937 498 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 ETFDHQ16134 617 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 Q499Y3 187 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 FAM27D1Q5T7N8 215 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 STPG1Q5TH74 334 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 ABHD17BQ5VST6 288 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 B3GNTL1Q67FW5 361 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms