RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RORCP51449 518 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 CLRN1P58418 232 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SIRPAP78324 504 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 PLGLB1Q02325 96 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 POU3F1Q03052 451 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 FOXO1Q12778 655 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 CDC20Q12834 499 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SLC10A1Q14973 349 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SF3B4Q15427 424 aaKnown RBP eCLIP7.13□□□□□ -1.274e-7■■■■■ 30.2
VPS39-213ENST00000570062 STK11Q15831 433 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 LINC01590Q5TEZ4 76 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SPINK14Q6IE38 97 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 LINC00696Q6ZRV3 163 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 TRILQ7L0X0 811 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 CHMP1BQ7LBR1 199 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 TPRA1Q86W33 373 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ATCAYQ86WG3 371 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 GLB1L2Q8IW92 636 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SULF2Q8IWU5 870 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 TIGD4Q8IY51 512 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 OR6V1Q8N148 313 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 FAM109AQ8N4B1 249 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 TEX19Q8NA77 164 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ZFP62Q8NB50 900 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 MDS2Q8NDY4 140 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 FAM83FQ8NEG4 500 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 OR10H5Q8NGA6 315 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 OR2V1Q8NHB1 315 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 DYNC2LI1Q8TCX1 351 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ZNF524Q96C55 264 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ZMYND19Q96E35 227 aaPredicted RBP7.13□□□□□ -1.27
VPS39-213ENST00000570062 SCMH1Q96GD3 660 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 CHCHD6Q9BRQ6 235 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 ZNF649Q9BS31 505 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 CDADC1Q9BWV3 514 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 HCAR1Q9BXC0 346 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 MROQ9BYG7 248 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 NUAK2Q9H093 628 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS39-213ENST00000570062 DCSTAMPQ9H295 470 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 SYT4Q9H2B2 425 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 MED20Q9H944 212 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 GP6Q9HCN6 339 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 HMG20AQ9NP66 347 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 B3GAT2Q9NPZ5 323 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 PARPBPQ9NWS1 579 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 RCE1Q9Y256 329 aa7.13□□□□□ -1.27
VPS39-213ENST00000570062 IGLV1-36A0A0B4J1U3 117 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 LOC100506127A0A0U1RQW1 187 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 LRRC3CA6NJW4 275 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 J3QLW9 94 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 SERPINI2O75830 405 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 CEACAM4O75871 244 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 GLSO94925 669 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 SYNGR4O95473 234 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF19P17023 458 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF182P17025 639 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 CELP19835 753 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 MAPK3P27361 379 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 SFTPDP35247 375 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 CRYBB2P43320 205 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ENTPD1P49961 510 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 PSMD7P51665 324 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 GFRA1P56159 465 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 B3GALT5-AS1P59052 145 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ROM1Q03395 351 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF85Q03923 595 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 RASGEF1BQ0VAM2 473 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 RSPO4Q2I0M5 234 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF829Q3KNS6 432 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF404Q494X3 552 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF766Q5HY98 468 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 OR2G6Q5TZ20 316 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 LIPKQ5VXJ0 399 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 HBMQ6B0K9 141 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF227Q86WZ6 799 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 CDC20BQ86Y33 519 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 KLBQ86Z14 1044 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 PM20D2Q8IYS1 436 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 TMEM99Q8N816 258 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 OTOSQ8NHW6 89 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 KLHDC3Q9BQ90 382 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 DCUN1D5Q9BTE7 237 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 MRI1Q9BV20 369 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 MRPL13Q9BYD1 178 aaKnown RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 WDR12Q9GZL7 423 aaKnown RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF552Q9H707 407 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 ZNF703Q9H7S9 590 aaPredicted RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 NIPAL2Q9H841 368 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 RNF122Q9H9V4 155 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 PALMDQ9NP74 551 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 EXOSC4Q9NPD3 245 aaKnown RBP7.12□□□□□ -1.27
VPS39-213ENST00000570062 ANKRD10Q9NXR5 420 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 EMC3Q9P0I2 261 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 KLHL13Q9P2N7 655 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 PEX16Q9Y5Y5 336 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 NAV2Q8IVL1 2488 aa7.12□□□□□ -1.27
VPS39-213ENST00000570062 RALGAPA1Q6GYQ0 2036 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SPEGQ15772 3267 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 A0A075B6Q4 140 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms