RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	DCD	P81605	110 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	INSM1	Q01101	510 aa	Predicted RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	GLO1	Q04760	184 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	PUDP	Q08623	228 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	MEP1B	Q16820	701 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	PCK2	Q16822	640 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	GSG1	Q2KHT4	349 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	BTBD16	Q32M84	506 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	NKAIN1	Q4KMZ8	207 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	PRAMEF17	Q5VTA0	474 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	METTL11B	Q5VVY1	283 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	LYSMD4	Q5XG99	296 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	ZNF385C	Q66K41	422 aa	Predicted RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	PTCRA	Q6ISU1	281 aa	Predicted RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	TMEM205	Q6UW68	189 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	CHRDL2	Q6WN34	429 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	ZNF704	Q6ZNC4	412 aa	Predicted RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	LANCL3	Q6ZV70	420 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	HDDC2	Q7Z4H3	204 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	KRT77	Q7Z794	578 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	TMPRSS12	Q86WS5	348 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	LSR	Q86X29	649 aa	Predicted RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	CATSPERD	Q86XM0	798 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	PRSS35	Q8N3Z0	413 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	APCDD1L	Q8NCL9	501 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	OR52I2	Q8NH67	350 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	SLC22A8	Q8TCC7	542 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	DUSP19	Q8WTR2	217 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	TSEN15	Q8WW01	171 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	GIMAP1	Q8WWP7	306 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	ASB10	Q8WXI3	467 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	NAT6	Q93015	286 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	HLA-C	Q95604	372 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	TMEM106A	Q96A25	262 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	C8orf44	Q96CB5	159 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	SLC25A36	Q96CQ1	311 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	DDIT4L	Q96D03	193 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	NXPE2	Q96DL1	559 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	RADIL	Q96JH8	1075 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	MRGPRX4	Q96LA9	322 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	GFM1	Q96RP9	751 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	ZNF587	Q96SQ5	575 aa	Predicted RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	KLHDC3	Q9BQ90	382 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	BEX2	Q9BXY8	128 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	C20orf85	Q9H1P6	137 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	SLC26A1	Q9H2B4	701 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	CCDC86	Q9H6F5	360 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	AUNIP	Q9H7T9	357 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	CHST11	Q9NPF2	352 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	DIABLO	Q9NR28	239 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	MRPL22	Q9NWU5	206 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	KLHL13	Q9P2N7	655 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	KCNG2	Q9UJ96	466 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	NXT1	Q9UKK6	140 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	CDV3	Q9UKY7	258 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	RARRES3	Q9UL19	164 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	NPIPA1	Q9UND3	350 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	RCE1	Q9Y256	329 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	MRPS7	Q9Y2R9	242 aa	Known RBP	5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	NPTN	Q9Y639	398 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472		R4GMQ9	66 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	ATG2B	Q96BY7	2078 aa		5.63	□□□□□ -1.51
CLN3-223	ENST00000566472	TRAV6	A0A075B6T7	132 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	TRAV8-7	A0A075B6U6	113 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	TRBV11-1	A0A0K0K1C0	115 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	LOC100289279	A0A1B0GTE1	492 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472		A0A1B0GVC2	190 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472		A0A1W2PPC1	479 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472		A6NIN4	97 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	SNRPGP15	A8MWD9	76 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	PSMD9	O00233	223 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	SRSF10	O75494	262 aa	Known RBP	5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	SCRG1	O75711	98 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ZFAND5	O76080	213 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	HLA-DQA2	P01906	255 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	MT-ND4	P03905	459 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ISG15	P05161	165 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ADRB1	P08588	477 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	SPARC	P09486	303 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	CSF1	P09603	554 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	UBC	P0CG48	685 aa	Known RBP	5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	CPN1	P15169	458 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	CTLA4	P16410	223 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ZNF823	P16415	610 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	IGFBP3	P17936	291 aa	Predicted RBP	5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	CDK2	P24941	298 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	SOX2	P48431	317 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	EMP2	P54851	167 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ADAM8	P78325	824 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	IKZF1	Q13422	519 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	EIF2B1	Q14232	305 aa	Known RBP	5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	RAB11B	Q15907	218 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ZNF239	Q16600	458 aa	Known RBP	5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	RNASE12	Q5GAN4	147 aa	Known RBP	5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	C1QL3	Q5VWW1	255 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	GLT8D1	Q68CQ7	371 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	FAM166A	Q6J272	317 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	ANKRD16	Q6P6B7	361 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	TMEM81	Q6P7N7	255 aa		5.62	□□□□□ -1.51
CLN3-223	ENST00000566472	PAPD4	Q6PIY7	484 aa	Known RBP	5.62	□□□□□ -1.51

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