RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 USP9YO00507 2555 aaPredicted RBP19■□□□□ 0.63
SNX1-206ENST00000559389 SPTAN1Q13813 2472 aaKnown RBP18.99■□□□□ 0.63
SNX1-206ENST00000559389 B4GALT1P15291 398 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 CTLA4P16410 223 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 HOXC12P31275 282 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 ZNF84P51523 738 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 CRISP1P54107 249 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 CDK5Q00535 292 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 ZNF362Q5T0B9 420 aaPredicted RBP18.99■□□□□ 0.63
SNX1-206ENST00000559389 C1QTNF12Q5T7M4 302 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 LEG1Q6P5S2 330 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 KLHL24Q6TFL4 600 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 ZNF813Q6ZN06 617 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 WDR31Q8NA23 367 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 NSMAFQ92636 917 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 GABARAPL3Q9BY60 117 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 OBP2BQ9NPH6 170 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 AMDHD2Q9Y303 409 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 SLC25A15Q9Y619 301 aa18.99■□□□□ 0.63
SNX1-206ENST00000559389 ALPK2Q86TB3 2170 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 A0A096LPE4 126 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 ARPC4-TTLL3A0A0A6YYG9 625 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 A0A1W2PPZ6 126 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 RENP00797 406 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 EPXP11678 715 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 GIPRP48546 466 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 ALDH3A2P51648 485 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 GINS1Q14691 196 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 NRN1LQ496H8 165 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 HIST2H2BCQ6DN03 193 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 FOXL2NBQ6ZUU3 175 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 SSX8Q7RTT4 187 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 NPEPL1Q8NDH3 523 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 OR52N5Q8NH56 324 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 HSD17B8Q92506 261 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 EME1Q96AY2 570 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 ZC3HAV1LQ96H79 300 aaKnown RBP18.98■□□□□ 0.63
SNX1-206ENST00000559389 DCLRE1BQ9H816 532 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 CMC2Q9NRP2 79 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 ZNF226Q9NYT6 803 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 KLHL21Q9UJP4 597 aa18.98■□□□□ 0.63
SNX1-206ENST00000559389 CRYGSP22914 178 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 MRPS34P82930 218 aaKnown RBP18.97■□□□□ 0.63
SNX1-206ENST00000559389 CRMP1Q14194 572 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 PPA1Q15181 289 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 ACSM5Q6NUN0 579 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 DNM1P34Q6PK57 102 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 WFDC8Q8IUA0 241 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 SLC37A3Q8NCC5 494 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 DDOQ99489 341 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 NUAK2Q9H093 628 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 FN3KQ9H479 309 aa18.97■□□□□ 0.63
SNX1-206ENST00000559389 A0A1W2PR80 420 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 OR6C68A6NDL8 312 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 RIIAD1A6NNX1 92 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 ZAR1LA6NP61 321 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 H0YHG0 523 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 SLC16A7O60669 478 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 IFNGP01579 166 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 HOXB1P14653 301 aaPredicted RBP18.96■□□□□ 0.63
SNX1-206ENST00000559389 ZNF3P17036 446 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 EPHA2P29317 976 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 UBE2NP61088 152 aaKnown RBP18.96■□□□□ 0.63
SNX1-206ENST00000559389 PTGES3Q15185 160 aaKnown RBP18.96■□□□□ 0.63
SNX1-206ENST00000559389 TRIP10Q15642 601 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 TMEM236Q5W0B7 351 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 ZBTB49Q6ZSB9 765 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 SLC22A24Q8N4F4 322 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 CYB561A3Q8NBI2 242 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 HTRA1Q92743 480 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 NABP1Q96AH0 204 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 MUCL1Q96DR8 90 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 SLC29A1Q99808 456 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 RACGAP1Q9H0H5 632 aa18.96■□□□□ 0.63
SNX1-206ENST00000559389 RPRD1BQ9NQG5 326 aaKnown RBP18.96■□□□□ 0.63
SNX1-206ENST00000559389 COL12A1Q99715 3063 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 IGLV1-36A0A0B4J1U3 117 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 A0A1W2PPL8 197 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 DCTN6O00399 190 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 CASQ2O14958 399 aaPredicted RBP18.95■□□□□ 0.62
SNX1-206ENST00000559389 SURF4O15260 269 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 KHDRBS3O75525 346 aaKnown RBP18.95■□□□□ 0.62
SNX1-206ENST00000559389 PEX2P28328 305 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 CRABP1P29762 137 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 CDAP32320 146 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 RAD23AP54725 363 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 ETFDHQ16134 617 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 SLX4IPQ5VYV7 408 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 CCDC36Q8IYA8 594 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 OR6V1Q8N148 313 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 TSSK2Q96PF2 358 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 RIBC2Q9H4K1 309 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 RNPEPL1Q9HAU8 725 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 ZNF224Q9NZL3 707 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 NPAP1Q9NZP6 1156 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 ORC6Q9Y5N6 252 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 FKBP7Q9Y680 259 aa18.95■□□□□ 0.62
SNX1-206ENST00000559389 PTPN13Q12923 2485 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 ZNF503-AS2A6NEH8 195 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 WNT11O96014 354 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms