RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 HIST3H3Q16695 136 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 CEACAM16Q2WEN9 425 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 ZIK1Q3SY52 487 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 NRN1LQ496H8 165 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 MESTQ5EB52 335 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 C10orf128Q5T292 105 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SFRP5Q5T4F7 317 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 ANKRD34AQ69YU3 496 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 ACSM5Q6NUN0 579 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 ANKRD16Q6P6B7 361 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 ZNF474Q6S9Z5 364 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 KLHL24Q6TFL4 600 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 BHLHA15Q7RTS1 189 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 GABRG1Q8N1C3 465 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 C17orf78Q8N4C9 275 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SETD9Q8NE22 299 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 OR8J1Q8NGP2 316 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 OR4Q3Q8NH05 313 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 MUCL1Q96DR8 90 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 HRASLS5Q96KN8 279 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 WACQ9BTA9 647 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 GRIP2Q9C0E4 1043 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 TOR3AQ9H497 397 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 CRLF2Q9HC73 371 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 OBP2BQ9NPH6 170 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 GALNT8Q9NY28 637 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 MOKQ9UQ07 419 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 GMPPBQ9Y5P6 360 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 KLF2Q9Y5W3 355 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 PRR14LQ5THK1 2151 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SPTAN1Q13813 2472 aaKnown RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 PKDREJQ9NTG1 2253 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 H0YAE9 185 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SURF4O15260 269 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SLC16A7O60669 478 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 TMCC2O75069 709 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SNAP29O95721 258 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 WNT11O96014 354 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 OR8G3PP0DMU2 310 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 COX5AP20674 150 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 IGHV1-2P23083 117 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 GGT2P36268 569 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 UBE2NP61088 152 aaKnown RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 GLO1Q04760 184 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 RUNX1T1Q06455 604 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 IL18R1Q13478 541 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 KEAP1Q14145 624 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 TMEM236Q5W0B7 351 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 C12orf73Q69YU5 71 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 LRFN4Q6PJG9 635 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SLC25A47Q6Q0C1 308 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 ZNF813Q6ZN06 617 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 PTCHD4Q6ZW05 846 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 LSRQ86X29 649 aaPredicted RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 CXorf67Q86X51 503 aaPredicted RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 IQCF1Q8N6M8 205 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 ZNF433Q8N7K0 673 aaPredicted RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 SLC37A3Q8NCC5 494 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 NPEPL1Q8NDH3 523 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SDR9C7Q8NEX9 313 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 CYGBQ8WWM9 190 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 NANOS1Q8WY41 292 aaKnown RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 HSD17B8Q92506 261 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 OTULINQ96BN8 352 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 Q96MT0 163 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 MUS81Q96NY9 551 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 ALKBH3Q96Q83 286 aaPredicted RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 NMNAT3Q96T66 252 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 FOXB1Q99853 325 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SYT4Q9H2B2 425 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 RERGLQ9H628 205 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 SRA1Q9HD15 236 aaKnown RBP8.13□□□□□ -1.11
LDLR-210ENST00000559340 NGBQ9NPG2 151 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 FAM118AQ9NWS6 357 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 B9D1Q9UPM9 204 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 AMDHD2Q9Y303 409 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 HSPE1-MOB4S4R3N1 261 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 LRRK2Q5S007 2527 aa8.13□□□□□ -1.11
LDLR-210ENST00000559340 NKX2-6A6NCS4 301 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 CASKO14936 926 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 TLX2O43763 284 aaPredicted RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 ZNF823P16415 610 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 LAP3P28838 519 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 FMO3P31513 532 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 UGT2B10P36537 528 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 CAPGP40121 348 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 PCBD1P61457 104 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 MRPS34P82930 218 aaKnown RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 ARF1P84077 181 aaKnown RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 FAM27E3Q08E93 113 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 TMED1Q13445 227 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 SLC35D3Q5M8T2 416 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 TIMM23BQ5SRD1 257 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 LCN1P1Q5VSP4 162 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 MEDAGQ5VYS4 303 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 STAC2Q6ZMT1 411 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 ZNF627Q7L945 461 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 CXXC5Q7LFL8 322 aaKnown RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 ZBTB46Q86UZ6 589 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms