RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 RIN1Q13671 783 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 Q499Y3 187 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 TRIM61Q5EBN2 209 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 WDR38Q5JTN6 314 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 SIAH3Q8IW03 269 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 ZNF519Q8TB69 540 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 MRPL48Q96GC5 212 aaKnown RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 METTL7AQ9H8H3 244 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 COL5A1P20908 1838 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 A0A1W2PNR3 127 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 OR4C45A6NMZ5 311 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 FTCDNL1E5RQL4 147 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 INMT-MINDY4F8WBC2 141 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 EIF1AYO14602 144 aaKnown RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 LAMTOR5O43504 91 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 MT-ATP6P00846 226 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 MT-ND4P03905 459 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 CCKBRP32239 447 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 KIR3DL2P43630 455 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 CAPZA2P47755 286 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 EIF1AXP47813 144 aaKnown RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 MRPS15P82914 257 aaKnown RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 IFITM2Q01629 132 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 PUDPQ08623 228 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 NTRK2Q16620 822 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 BCL2L15Q5TBC7 163 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 TCEAL6Q6IPX3 200 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 PYHIN1Q6K0P9 492 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 LINGO2Q7L985 606 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 TMPRSS12Q86WS5 348 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 MAML2Q8IZL2 1156 aaPredicted RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 TOMM5Q8N4H5 51 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 HGDQ93099 445 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 TCEAL3Q969E4 200 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 YIPF5Q969M3 257 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 C5orf34Q96MH7 638 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 GAL3ST1Q99999 423 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 NUDT15Q9NV35 164 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 PPP4R1LQ9P1A2 415 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 FBXL3Q9UKT7 428 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 SPATA2Q9UM82 520 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 V9GY05 133 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 HTR3EA5X5Y0 456 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 SYPP08247 313 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 KLK2P20151 261 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 GIFP27352 417 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 BTCP35070 178 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 TLE3Q04726 772 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 MFGE8Q08431 387 aaPredicted RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 GPAT4Q86UL3 456 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 DUSP18Q8NEJ0 188 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 TMEM234Q8WY98 164 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 MCUBQ9NWR8 336 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 ABRACLQ9P1F3 81 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 KLK11Q9UBX7 282 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 RPH3AQ9Y2J0 694 aaPredicted RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 PCDHGA9Q9Y5G4 932 aaKnown RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 CACNG2Q9Y698 323 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 FAM186AA6NE01 2351 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 EXPH5Q8NEV8 1989 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 IGLV1-36A0A0B4J1U3 117 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 VSTM2BA6NLU5 285 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 CENPXA8MT69 81 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 PNLIPP16233 465 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 PTBP1P26599 531 aaKnown RBP eCLIP9.54□□□□□ -0.881e-11■■■■■ 54.6
CUX1-217ENST00000558836 SLC6A1P30531 599 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 LCN1P31025 176 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 HOXD11P31277 338 aaPredicted RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 SFTPDP35247 375 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 CLDN6P56747 220 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 EIF2B1Q14232 305 aaKnown RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 FAAP20Q6NZ36 180 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 ZNF248Q8NDW4 579 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 BEST4Q8NFU0 473 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 TSEN15Q8WW01 171 aaKnown RBP9.54□□□□□ -0.88
CUX1-217ENST00000558836 OIT3Q8WWZ8 545 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 MR1Q95460 341 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 SLC25A38Q96DW6 304 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 DEFB126Q9BYW3 111 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 NKIRAS2Q9NYR9 191 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 NPAP1Q9NZP6 1156 aa9.54□□□□□ -0.88
CUX1-217ENST00000558836 ANKUB1A6NFN9 424 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 AIPO00170 330 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 ARSBP15848 533 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 CLDN20P56880 219 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 EFR3AQ14156 821 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 TMEM53Q6P2H8 277 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 KRT77Q7Z794 578 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 GLB1L2Q8IW92 636 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 NUBPLQ8TB37 319 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 SYNPRQ8TBG9 265 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 MARVELD1Q9BSK0 173 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 ABHD6Q9BV23 337 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 NDEL1Q9GZM8 345 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 ZCCHC4Q9H5U6 513 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 PAQR5Q9NXK6 330 aaPredicted RBP9.53□□□□□ -0.88
CUX1-217ENST00000558836 MYEF2Q9P2K5 600 aaKnown RBP9.53□□□□□ -0.88
CUX1-217ENST00000558836 OR5V1Q9UGF6 321 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 FKBP7Q9Y680 259 aa9.53□□□□□ -0.88
CUX1-217ENST00000558836 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms