RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 NPIPB7O75200 414 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DXOO77932 396 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 AKR7A3O95154 331 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TGM6O95932 706 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 RPLP1P05386 114 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 NAT2P11245 290 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FOLR1P15328 257 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PNLIPP16233 465 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 CSF2RBP32927 897 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SMCPP49901 116 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 MAP2K6P52564 334 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ACY1Q03154 408 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SMAD2Q15796 467 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 RNASE12Q5GAN4 147 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 C1orf140Q5VVS0 124 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 RHBDD2Q6NTF9 364 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PWWP2BQ6NUJ5 590 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 LRRC69Q6ZNQ3 347 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FCRLAQ7L513 359 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DPY19L4Q7Z388 723 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SYT9Q86SS6 491 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 LRRTM1Q86UE6 522 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PM20D2Q8IYS1 436 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DTX3Q8N9I9 347 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF248Q8NDW4 579 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SYNPRQ8TBG9 265 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 GPR119Q8TDV5 335 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 THEM6Q8WUY1 208 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TSEN15Q8WW01 171 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 GIMAP1Q8WWP7 306 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF501Q96CX3 271 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SLC25A38Q96DW6 304 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 C4orf45Q96LM5 186 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TSSK2Q96PF2 358 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 GFI1Q99684 422 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PTDSS2Q9BVG9 487 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 C20orf85Q9H1P6 137 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SLC17A5Q9NRA2 495 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FGF21Q9NSA1 209 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TAS2R8Q9NYW2 309 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TAS2R5Q9NYW4 299 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 WNT16Q9UBV4 365 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 STEAP1Q9UHE8 339 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 B9D1Q9UPM9 204 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FOXJ3Q9UPW0 622 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 LAMA3Q16787 3333 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 IGLV3-12A0A075B6K2 115 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ANKUB1A6NFN9 424 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PRR32B1ATL7 298 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 IDSB3KWA1 339 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 C11orf98E9PRG8 122 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 H7C1C5 153 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PSMD9O00233 223 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF593O00488 134 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 KHNYNO15037 678 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF780AO75290 641 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 HLA-DQA2P01906 255 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 CYC1P08574 325 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ANKRD34CP0C6C1 535 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 NAGAP17050 411 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ARRB1P49407 418 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 CSNK1EP49674 416 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DAP3P51398 398 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 RIDAP52758 137 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 CAPZA1P52907 286 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DLX5P56178 289 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 LCN6P62502 163 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ROM1Q03395 351 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SSBP1Q04837 148 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZP4Q12836 540 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SLC17A1Q14916 467 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FCN2Q15485 313 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ACKR1Q16570 336 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 GSG1Q2KHT4 349 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 VWA2Q5GFL6 755 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 METTL11BQ5VVY1 283 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TMPRSS12Q86WS5 348 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF679Q8IYX0 411 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DND1Q8IYX4 353 aaKnown RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 FAM109AQ8N4B1 249 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 NUBPLQ8TB37 319 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 RNF128Q8TEB7 428 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 HSD17B8Q92506 261 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 HGDQ93099 445 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 TMEM106AQ96A25 262 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DACT3Q96B18 629 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SLC25A36Q96CQ1 311 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DUSP23Q9BVJ7 150 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 SEMA4CQ9C0C4 833 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 NRSN2Q9GZP1 204 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 DUSP15Q9H1R2 295 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-206ENST00000558338 AUNIPQ9H7T9 357 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 IFT22Q9H7X7 185 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 HRASLSQ9HDD0 168 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 PLSCR3Q9NRY6 295 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 CKLFQ9UBR5 152 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 OR5V1Q9UGF6 321 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF222Q9UK12 451 aa6.56□□□□□ -1.36
VPS13C-206ENST00000558338 IGLV1-36A0A0B4J1U3 117 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 A0A1B0GUH1 482 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms