RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	EXD2	Q9NVH0	621 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	MCUB	Q9NWR8	336 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	RHBDL2	Q9NX52	303 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	CCDC59	Q9P031	241 aa	Known RBP	3.57	□□□□□ -1.84
USP44-208	ENST00000552440	VAPA	Q9P0L0	249 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	C19orf25	Q9UFG5	118 aa	Predicted RBP	3.57	□□□□□ -1.84
USP44-208	ENST00000552440	AGO1	Q9UL18	857 aa	Known RBP	3.57	□□□□□ -1.84
USP44-208	ENST00000552440	SLC7A7	Q9UM01	511 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	OR2W1	Q9Y3N9	320 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	3.57	□□□□□ -1.84
USP44-208	ENST00000552440	PTPRK	Q15262	1439 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	ZCCHC11	Q5TAX3	1644 aa	Known RBP	3.57	□□□□□ -1.84
USP44-208	ENST00000552440	ARID2	Q68CP9	1835 aa		3.57	□□□□□ -1.84
USP44-208	ENST00000552440	TRBV4-1	A0A0J9YWV2	114 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	NKX6-3	A6NJ46	265 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SNURFL	B1AK76	121 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440		H3BMQ9	156 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440		H3BNH8	94 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440		M0QZ92	97 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CPD	O75976	1380 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SOX30	O94993	753 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SNAPIN	O95295	136 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	IGKV2-30	P06310	120 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	FGF3	P11487	239 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	MYOG	P15173	224 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	YAP1	P46937	504 aa	Known RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	IDH2	P48735	452 aa	Known RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	HCAR3	P49019	387 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	UGT2B15	P54855	530 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZP1	P60852	638 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SPCS3	P61009	180 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	GNMT	Q14749	295 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SPCS2	Q15005	226 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	POU2AF1	Q16633	256 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	PGGHG	Q32M88	737 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	BSX	Q3C1V8	233 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TIGIT	Q495A1	244 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ASPRV1	Q53RT3	343 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	PDZD11	Q5EBL8	140 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DCAF10	Q5QP82	559 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TYW3	Q6IPR3	259 aa	Known RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TRNP1	Q6NT89	227 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	NIPAL1	Q6NVV3	410 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DNM1P34	Q6PK57	102 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CCNI2	Q6ZMN8	369 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF782	Q6ZMW2	699 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440		Q6ZVQ6	151 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	MAGI2	Q86UL8	1455 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	PIGZ	Q86VD9	579 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	RALGPS2	Q86X27	583 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	NAXD	Q8IW45	347 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	STPG2	Q8N412	459 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	RIBC1	Q8N443	379 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	MREG	Q8N565	214 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ACBD4	Q8NC06	268 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SLC37A3	Q8NCC5	494 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	OR2T12	Q8NG77	320 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZPLD1	Q8TCW7	415 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ADAMTS16	Q8TE57	1224 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CXorf40A	Q8TE69	158 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	FAM172A	Q8WUF8	416 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	IFT81	Q8WYA0	676 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	UFD1	Q92890	307 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	OMA1	Q96E52	524 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	NOL4L	Q96MY1	436 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CGREF1	Q99674	301 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	BARHL1	Q9BZE3	327 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	GAREM1	Q9H706	876 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	EML4	Q9HC35	981 aa	Known RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	HRASLS2	Q9NWW9	162 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ELF5	Q9UKW6	265 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	GUCA1B	Q9UMX6	200 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ERVW-1	Q9UQF0	538 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TRAPPC8	Q9Y2L5	1435 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DISP1	Q96F81	1524 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZFYVE9	O95405	1425 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	MET	P08581	1390 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TSPAN11	A1L157	253 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ASPDH	A6ND91	283 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TRDC	B7Z8K6	153 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	FTCDNL1	E5RQL4	147 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SLC9A3R1	O14745	358 aa	Predicted RBP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ANGPTL1	O95841	491 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	HP	P00738	406 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CDK1	P06493	297 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF35	P13682	527 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	CCNE1	P24864	410 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	EDNRA	P25101	427 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	RASSF2	P50749	326 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	DCDC1	P59894	354 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF91	Q05481	1191 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	AES	Q08117	197 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.56	□□□□□ -1.84
USP44-208	ENST00000552440	TRIM16L	Q309B1	348 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	ZCWPW2	Q504Y3	356 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	SPANXN4	Q5MJ08	99 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	FFAR4	Q5NUL3	377 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	METTL21C	Q5VZV1	264 aa		3.56	□□□□□ -1.84
USP44-208	ENST00000552440	C3orf33	Q6P1S2	294 aa		3.56	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms