RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 LCA5Q86VQ0 697 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KLBQ86Z14 1044 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF100Q8IYN0 542 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 MMGT1Q8N4V1 131 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CEP112Q8N8E3 955 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZDHHC22Q8N966 263 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZIC4Q8N9L1 334 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 DNAAF1Q8NEP3 725 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ATP6V1C2Q8NEY4 427 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 OR52E4Q8NGH9 312 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 OR5W2Q8NH69 310 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 RFWD2Q8NHY2 731 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 METTL6Q8TCB7 284 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 C2CD4CQ8TF44 421 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF418Q8TF45 676 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 APH1AQ96BI3 265 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 EGLN2Q96KS0 407 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 FCRL1Q96LA6 429 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF347Q96SE7 839 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 MRPL57Q9BQC6 102 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KATNB1Q9BVA0 655 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 RBM4Q9BWF3 364 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 EBPLQ9BY08 206 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CADM1Q9BY67 442 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 FUT8Q9BYC5 575 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 HOXD1Q9GZZ0 328 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 METTL17Q9H7H0 456 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 MED4Q9NPJ6 270 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ESM1Q9NQ30 184 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 SLC7A10Q9NS82 523 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CA10Q9NS85 328 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KRT84Q9NSB2 600 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 GIN1Q9NXP7 522 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 SENP1Q9P0U3 644 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CRNNQ9UBG3 495 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 FBXO9Q9UK97 447 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 DHDHQ9UQ10 334 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CARD8Q9Y2G2 431 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 AMDHD2Q9Y303 409 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 NOSIPQ9Y314 301 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 FKBP7Q9Y680 259 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KCNE3Q9Y6H6 103 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 PCNX3Q9H6A9 2034 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CXorf65A6NEN9 183 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ERICH4A6NGS2 130 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MCIDASD6RGH6 385 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 LYNX1G3V0Z9 82 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TRIM77I1YAP6 450 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 DYNC1I1O14576 645 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 GPR171O14626 319 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 WNT9BO14905 357 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 RAD51CO43502 376 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MRPL33O75394 65 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SUPT7LO94864 414 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PMS2P2O95744 297 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 IGLV1-44P01699 117 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MSMBP08118 114 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ALOX5P09917 674 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 OR4A8P0C604 315 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 LYNX1P0DP58 116 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 HPGDP15428 266 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 IMPDH1P20839 514 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PCMT1P22061 227 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PAX7P23759 505 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CALCRP30988 508 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 NTSP30990 170 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ASMTP46597 345 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CLK1P49759 484 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SERPINB8P50452 374 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CCR9P51686 369 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 MVDP53602 400 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PLTPP55058 493 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 FOXA1P55317 472 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PKNOX1P55347 436 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PRPS1P60891 318 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SNRPD2P62316 118 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CSNK2A1P68400 391 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 NAAAQ02083 359 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 HSPB3Q12988 150 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CALCOCO2Q13137 446 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 PDE7AQ13946 482 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SLC17A1Q14916 467 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 QPRTQ15274 297 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CARTPTQ16568 116 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 NDUFAF6Q330K2 333 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 SYT14P1Q58G82 188 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ELFN2Q5R3F8 820 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 OTUD3Q5T2D3 398 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TSPO2Q5TGU0 170 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 NOXRED1Q6NXP6 359 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 C3orf33Q6P1S2 294 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 GPRIN3Q6ZVF9 776 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CPLX4Q7Z7G2 160 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 CARM1Q86X55 608 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ARMC8Q8IUR7 673 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 ZCCHC24Q8N2G6 241 aaKnown RBP3.02□□□□□ -1.93
LIMA1-206ENST00000550611 UBE2J2Q8N2K1 259 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM217Q8N7C4 229 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 COX18Q8N8Q8 333 aa3.02□□□□□ -1.93
LIMA1-206ENST00000550611 NUP37Q8NFH4 326 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms