RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SLC25A47Q6Q0C1 308 aa15.05■□□□□ -0
LIG1-204ENST00000542460 BHLHA15Q7RTS1 189 aaPredicted RBP15.05■□□□□ -0
LIG1-204ENST00000542460 C1orf162Q8NEQ5 155 aaPredicted RBP15.05■□□□□ -0
LIG1-204ENST00000542460 STEAP2Q8NFT2 490 aa15.05■□□□□ -0
LIG1-204ENST00000542460 PLEKHA8Q96JA3 519 aa15.05■□□□□ -0
LIG1-204ENST00000542460 MUS81Q96NY9 551 aa15.05■□□□□ -0
LIG1-204ENST00000542460 DDOQ99489 341 aa15.05■□□□□ -0
LIG1-204ENST00000542460 USB1Q9BQ65 265 aaKnown RBP15.05■□□□□ -0
LIG1-204ENST00000542460 NUAK2Q9H093 628 aa15.05■□□□□ -0
LIG1-204ENST00000542460 OR10A4Q9H209 315 aa15.05■□□□□ -0
LIG1-204ENST00000542460 VCX3BQ9H321 246 aa15.05■□□□□ -0
LIG1-204ENST00000542460 TVP23BQ9NYZ1 205 aa15.05■□□□□ -0
LIG1-204ENST00000542460 ALPK2Q86TB3 2170 aa15.05■□□□□ -0
LIG1-204ENST00000542460 IGKV1D-43A0A0B4J1Z2 117 aa15.04■□□□□ -0
LIG1-204ENST00000542460 CYSRT1A8MQ03 144 aa15.04■□□□□ -0
LIG1-204ENST00000542460 SLC16A7O60669 478 aa15.04■□□□□ -0
LIG1-204ENST00000542460 RAD51DO75771 328 aa15.04■□□□□ -0
LIG1-204ENST00000542460 GRNP28799 593 aaKnown RBP15.04■□□□□ -0
LIG1-204ENST00000542460 CRMP1Q14194 572 aa15.04■□□□□ -0
LIG1-204ENST00000542460 TSC22D1Q15714 1073 aa15.04■□□□□ -0
LIG1-204ENST00000542460 GABRA6Q16445 453 aa15.04■□□□□ -0
LIG1-204ENST00000542460 SNAPC1Q16533 368 aa15.04■□□□□ -0
LIG1-204ENST00000542460 C12orf73Q69YU5 71 aa15.04■□□□□ -0
LIG1-204ENST00000542460 DNM1P34Q6PK57 102 aa15.04■□□□□ -0
LIG1-204ENST00000542460 ZNF627Q7L945 461 aa15.04■□□□□ -0
LIG1-204ENST00000542460 CYB561A3Q8NBI2 242 aa15.04■□□□□ -0
LIG1-204ENST00000542460 OR1K1Q8NGR3 316 aa15.04■□□□□ -0
LIG1-204ENST00000542460 NSMAFQ92636 917 aa15.04■□□□□ -0
LIG1-204ENST00000542460 BOD1Q96IK1 185 aa15.04■□□□□ -0
LIG1-204ENST00000542460 HRASLS5Q96KN8 279 aa15.04■□□□□ -0
LIG1-204ENST00000542460 MBOAT4Q96T53 435 aa15.04■□□□□ -0
LIG1-204ENST00000542460 FOXB1Q99853 325 aa15.04■□□□□ -0
LIG1-204ENST00000542460 RPRD1BQ9NQG5 326 aaKnown RBP15.04■□□□□ -0
LIG1-204ENST00000542460 NPDC1Q9NQX5 325 aaPredicted RBP15.04■□□□□ -0
LIG1-204ENST00000542460 DLGAP1O14490 977 aa15.03■□□□□ -0
LIG1-204ENST00000542460 KHDRBS3O75525 346 aaKnown RBP15.03■□□□□ -0
LIG1-204ENST00000542460 CTLA4P16410 223 aa15.03■□□□□ -0
LIG1-204ENST00000542460 PAICSP22234 425 aaKnown RBP15.03■□□□□ -0
LIG1-204ENST00000542460 PEX19P40855 299 aa15.03■□□□□ -0
LIG1-204ENST00000542460 GUCA1AP43080 201 aaPredicted RBP15.03■□□□□ -0
LIG1-204ENST00000542460 PTDSS1P48651 473 aaKnown RBP15.03■□□□□ -0
LIG1-204ENST00000542460 ANKRD16Q6P6B7 361 aa15.03■□□□□ -0
LIG1-204ENST00000542460 TSSK2Q96PF2 358 aa15.03■□□□□ -0
LIG1-204ENST00000542460 RERGLQ9H628 205 aa15.03■□□□□ -0
LIG1-204ENST00000542460 SRA1Q9HD15 236 aaKnown RBP15.03■□□□□ -0
LIG1-204ENST00000542460 FAM118AQ9NWS6 357 aa15.03■□□□□ -0
LIG1-204ENST00000542460 B9D1Q9UPM9 204 aa15.03■□□□□ -0
LIG1-204ENST00000542460 FKBP7Q9Y680 259 aa15.03■□□□□ -0
LIG1-204ENST00000542460 FREM1Q5H8C1 2179 aa15.03■□□□□ -0
LIG1-204ENST00000542460 E9PQ18 207 aa15.02■□□□□ -0
LIG1-204ENST00000542460 DCTN6O00399 190 aa15.02■□□□□ -0
LIG1-204ENST00000542460 PPP3CBP16298 524 aa15.02■□□□□ -0
LIG1-204ENST00000542460 CCKARP32238 428 aa15.02■□□□□ -0
LIG1-204ENST00000542460 CDC42P60953 191 aa15.02■□□□□ -0
LIG1-204ENST00000542460 ETFDHQ16134 617 aa15.02■□□□□ -0
LIG1-204ENST00000542460 NRN1LQ496H8 165 aa15.02■□□□□ -0
LIG1-204ENST00000542460 ZBTB46Q86UZ6 589 aa15.02■□□□□ -0
LIG1-204ENST00000542460 P2RY8Q86VZ1 359 aa15.02■□□□□ -0
LIG1-204ENST00000542460 OR6V1Q8N148 313 aa15.02■□□□□ -0
LIG1-204ENST00000542460 C17orf78Q8N4C9 275 aa15.02■□□□□ -0
LIG1-204ENST00000542460 ZNF555Q8NEP9 628 aa15.02■□□□□ -0
LIG1-204ENST00000542460 OR2T4Q8NH00 348 aa15.02■□□□□ -0
LIG1-204ENST00000542460 BCL2L2Q92843 193 aaPredicted RBP15.02■□□□□ -0
LIG1-204ENST00000542460 S100PBPQ96BU1 408 aa15.02■□□□□ -0
LIG1-204ENST00000542460 NMNAT2Q9BZQ4 307 aa15.02■□□□□ -0
LIG1-204ENST00000542460 ACTR6Q9GZN1 396 aa15.02■□□□□ -0
LIG1-204ENST00000542460 FN3KQ9H479 309 aa15.02■□□□□ -0
LIG1-204ENST00000542460 TMEM38BQ9NVV0 291 aa15.02■□□□□ -0
LIG1-204ENST00000542460 NDRG4Q9ULP0 352 aaKnown RBP15.02■□□□□ -0
LIG1-204ENST00000542460 UGT2A1Q9Y4X1 527 aa15.02■□□□□ -0
LIG1-204ENST00000542460 NBPF19A0A087WUL8 3843 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 UTP20O75691 2785 aaKnown RBP15.02□□□□□ -0.01
LIG1-204ENST00000542460 LOC100130705A0A1B0GUX0 176 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 PRSS44E7EML9 344 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 PRR23D1E9PI22 279 aaPredicted RBP15.02□□□□□ -0.01
LIG1-204ENST00000542460 H0YJX3 145 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 C19orf84I3L1E1 186 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 SLC16A6O15403 523 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 CLDN1O95832 211 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 PRR23D2P0DMB1 279 aaPredicted RBP15.02□□□□□ -0.01
LIG1-204ENST00000542460 HOXB1P14653 301 aaPredicted RBP15.02□□□□□ -0.01
LIG1-204ENST00000542460 B4GALT1P15291 398 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 NPR2P20594 1047 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 GGT2P36268 569 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 SLC25A1P53007 311 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 MRPS34P82930 218 aaKnown RBP15.02□□□□□ -0.01
LIG1-204ENST00000542460 EFNB1P98172 346 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 FBXW10Q5XX13 1052 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 ZNF813Q6ZN06 617 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 PTP4A1Q93096 173 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 OTULINQ96BN8 352 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 RACGAP1Q9H0H5 632 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 SEC61A2Q9H9S3 476 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 NDRG3Q9UGV2 375 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 COA3Q9Y2R0 106 aaPredicted RBP15.02□□□□□ -0.01
LIG1-204ENST00000542460 GMPPBQ9Y5P6 360 aa15.02□□□□□ -0.01
LIG1-204ENST00000542460 A0A096LPE4 126 aa15.01□□□□□ -0.01
LIG1-204ENST00000542460 IGLV1-36A0A0B4J1U3 117 aa15.01□□□□□ -0.01
LIG1-204ENST00000542460 A0A1W2PPZ6 126 aa15.01□□□□□ -0.01
LIG1-204ENST00000542460 OR5H1A6NKK0 313 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms