RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SLCO1C1Q9NYB5 712 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 CUBNO60494 3623 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 YLPM1P49750 1951 aaKnown RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 EDF1O60869 148 aaKnown RBP12.64□□□□□ -0.39
VPS28-215ENST00000531924 TFP02787 698 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 MT-ND1P03886 318 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 F13BP05160 661 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 CCL2P13500 99 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 FUT1P19526 365 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 CCNOP22674 350 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 IFNA8P32881 189 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 APLNRP35414 380 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 RBM34P42696 430 aaKnown RBP12.64□□□□□ -0.39
VPS28-215ENST00000531924 MRPS11P82912 194 aaKnown RBP12.64□□□□□ -0.39
VPS28-215ENST00000531924 MYBPC1Q00872 1141 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 RPL18Q07020 188 aaKnown RBP12.64□□□□□ -0.39
VPS28-215ENST00000531924 SCGB2A2Q13296 93 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 PCGF3Q3KNV8 242 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 NANOGP8Q6NSW7 305 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 CCDC80Q76M96 950 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 ZNF584Q8IVC4 421 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 LRRC18Q8N456 261 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 ZNF519Q8TB69 540 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 ZNF347Q96SE7 839 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 ZNF426Q9BUY5 554 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 BCL2L14Q9BZR8 327 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 OCEL1Q9H607 264 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 LPAR2Q9HBW0 351 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 CCNB1IP1Q9NPC3 277 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 INIPQ9NRY2 104 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 MYEF2Q9P2K5 600 aaKnown RBP12.64□□□□□ -0.39
VPS28-215ENST00000531924 METRNQ9UJH8 293 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 GRIP1Q9Y3R0 1128 aa12.64□□□□□ -0.39
VPS28-215ENST00000531924 MALRD1Q5VYJ5 2156 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 CENPBD1B2RD01 187 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 MGRN1O60291 552 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 OR7A10O76100 309 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 OR5F1O95221 314 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 TROVE2P10155 538 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS28-215ENST00000531924 NR2C1P13056 603 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 ACADSP16219 412 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 AQP2P41181 271 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 GUCA1AP43080 201 aaPredicted RBP12.63□□□□□ -0.39
VPS28-215ENST00000531924 UCP2P55851 309 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 TEKQ02763 1124 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 NRN1LQ496H8 165 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 ERICH5Q6P6B1 374 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 UNQ6126/PRO20091Q6UXV3 157 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 NOXO1Q8NFA2 376 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 OR8J3Q8NGG0 315 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 CLDND2Q8NHS1 167 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 TMEM239Q8WW34 195 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 LRRC58Q96CX6 371 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 C1orf159Q96HA4 380 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 PRSS27Q9BQR3 290 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 POLR2J2Q9GZM3 115 aaKnown RBP12.63□□□□□ -0.39
VPS28-215ENST00000531924 POLR2J3Q9H1A7 115 aaKnown RBP12.63□□□□□ -0.39
VPS28-215ENST00000531924 MEPEQ9NQ76 525 aaPredicted RBP12.63□□□□□ -0.39
VPS28-215ENST00000531924 ZNF275Q9NSD4 429 aaPredicted RBP12.63□□□□□ -0.39
VPS28-215ENST00000531924 DECR2Q9NUI1 292 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 HIF1ANQ9NWT6 349 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 TREM2Q9NZC2 230 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 EIF3KQ9UBQ5 218 aaKnown RBP12.63□□□□□ -0.39
VPS28-215ENST00000531924 RIMS3Q9UJD0 308 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 MED31Q9Y3C7 131 aa12.63□□□□□ -0.39
VPS28-215ENST00000531924 C17orf100A8MU93 164 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 CDC14BO60729 498 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 SHOX2O60902 331 aaPredicted RBP12.62□□□□□ -0.39
VPS28-215ENST00000531924 SNAP29O95721 258 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 CLPTM1O96005 669 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 MSMBP08118 114 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 TNFRSF1BP20333 461 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 MAGEB1P43366 347 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 UGT2B15P54855 530 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 CCL8P80075 99 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 RUNX1T1Q06455 604 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 CD47Q08722 323 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 MAPRE2Q15555 327 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 SGCAQ16586 387 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 RABL3Q5HYI8 236 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 TSPYL5Q86VY4 417 aaPredicted RBP12.62□□□□□ -0.39
VPS28-215ENST00000531924 PAQR4Q8N4S7 273 aaPredicted RBP12.62□□□□□ -0.39
VPS28-215ENST00000531924 PCYOX1LQ8NBM8 494 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 OR51F2Q8NH61 342 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 PFN4Q8NHR9 129 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 TMEM255BQ8WV15 326 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 ASB10Q8WXI3 467 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 NSMAFQ92636 917 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 YIPF5Q969M3 257 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 TMEM186Q96B77 213 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 TPD52L3Q96J77 140 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 TMEM120AQ9BXJ8 343 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 METTL17Q9H7H0 456 aaPredicted RBP12.62□□□□□ -0.39
VPS28-215ENST00000531924 VIPAS39Q9H9C1 493 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 SIAEQ9HAT2 523 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 GID8Q9NWU2 228 aa12.62□□□□□ -0.39
VPS28-215ENST00000531924 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.62□□□□□ -0.393e-7■■■■□ 21.3
VPS28-215ENST00000531924 GMNCA6NCL1 334 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 BBIP1A8MTZ0 92 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 FBP2O00757 339 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms