RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RUNX1T1Q06455 604 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 LAPTM4AQ15012 233 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 SLC16A14Q7RTX9 510 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 OR4K5Q8NGD3 323 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 KCNK17Q96T54 332 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 KCNN2Q9H2S1 579 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 SLC7A8Q9UHI5 535 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 CMAHPQ9Y471 501 aa17.84■□□□□ 0.45
VPS28-206ENST00000526734 SLC22A23A1A5C7 686 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 HOXB4P17483 251 aaPredicted RBP17.83■□□□□ 0.44
VPS28-206ENST00000526734 EVX1P49640 407 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 SMIM11AP58511 58 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 CTXN1P60606 82 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 CD47Q08722 323 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 KRT72Q14CN4 511 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 THEM4Q5T1C6 240 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 SYT14Q8NB59 555 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 FAM168AQ92567 244 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 NMD3Q96D46 503 aaKnown RBP17.83■□□□□ 0.44
VPS28-206ENST00000526734 MS4A3Q96HJ5 214 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 RBP7Q96R05 134 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 SIAEQ9HAT2 523 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 NDUFAF4Q9P032 175 aa17.83■□□□□ 0.44
VPS28-206ENST00000526734 hCG_2039718K7EN88 272 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 NDUFS8O00217 210 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 TP53P04637 393 aaPredicted RBP17.82■□□□□ 0.44
VPS28-206ENST00000526734 GLRXP35754 106 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 LSM11P83369 360 aaKnown RBP eCLIP17.82■□□□□ 0.44
VPS28-206ENST00000526734 PLP2Q04941 152 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 TOP3AQ13472 1001 aaPredicted RBP17.82■□□□□ 0.44
VPS28-206ENST00000526734 RAB39AQ14964 217 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 KRT80Q6KB66 452 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 TSEN54Q7Z6J9 526 aaKnown RBP17.82■□□□□ 0.44
VPS28-206ENST00000526734 RNF148Q8N7C7 305 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 LRRC75AQ8NAA5 344 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 OR1J2Q8NGS2 313 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 OR51A7Q8NH64 312 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 SLC7A13Q8TCU3 470 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 HDAC2Q92769 488 aaKnown RBP17.82■□□□□ 0.44
VPS28-206ENST00000526734 C7orf34Q96L11 122 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 SH3GL3Q99963 347 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 RAB1BQ9H0U4 201 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 RNF121Q9H920 327 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 ARL8BQ9NVJ2 186 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 CD300AQ9UGN4 299 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 VPS13CQ709C8 3753 aa17.82■□□□□ 0.44
VPS28-206ENST00000526734 NSD1Q96L73 2696 aaPredicted RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 IGHV4-30-2A0A087WSY4 118 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 TRAV27A0A087WT01 109 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 AHCYL1O43865 530 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 GUCA1AP43080 201 aaPredicted RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 PDLIM4P50479 330 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 MXRA7P84157 204 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 PPP2R2BQ00005 443 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 MYBPC1Q00872 1141 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 ZBED5Q49AG3 693 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 FGD3Q5JSP0 725 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 GKAP1Q5VSY0 366 aaPredicted RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 Q71RC1 249 aaPredicted RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 ZNF525Q8N782 197 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 RBM15BQ8NDT2 890 aaKnown RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 OR13C2Q8NGS9 318 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 ZNF519Q8TB69 540 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 C10orf105Q8TEF2 133 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 NEU4Q8WWR8 484 aaPredicted RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 MRPL24Q96A35 216 aaKnown RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 PYURFQ96I23 114 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 DHRS1Q96LJ7 313 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 NSMCE2Q96MF7 247 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 SORCS2Q96PQ0 1159 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 TNFRSF13CQ96RJ3 184 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 CDRT15Q96T59 188 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 DOK1Q99704 481 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 VRK1Q99986 396 aaPredicted RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 LRMDAQ9H2I8 198 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 DYNLRB1Q9NP97 96 aa17.81■□□□□ 0.44
VPS28-206ENST00000526734 ZNF346Q9UL40 294 aaKnown RBP17.81■□□□□ 0.44
VPS28-206ENST00000526734 IQCMA0A1B0GVH7 501 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 SNAP29O95721 258 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 TCN1P20061 433 aaPredicted RBP17.8■□□□□ 0.44
VPS28-206ENST00000526734 FUT4P22083 530 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 RPL4P36578 427 aaKnown RBP17.8■□□□□ 0.44
VPS28-206ENST00000526734 GPR4P46093 362 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 LOXL1Q08397 574 aaPredicted RBP17.8■□□□□ 0.44
VPS28-206ENST00000526734 FHL1Q13642 323 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 PODNL1Q6PEZ8 512 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 SLC25A47Q6Q0C1 308 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 ARIH2OSQ8N7S6 290 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 SLC30A7Q8NEW0 376 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 MCUR1Q96AQ8 359 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 CCT8L2Q96SF2 557 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 CDH20Q9HBT6 801 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 UGT2A1Q9Y4X1 527 aa17.8■□□□□ 0.44
VPS28-206ENST00000526734 HIVEP2P31629 2446 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 ARPC2O15144 300 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 SLC2A10O95528 541 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 FAM107AO95990 144 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 CD14P08571 375 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 VLDLRP98155 873 aa17.79■□□□□ 0.44
VPS28-206ENST00000526734 TBC1D28Q2M2D7 210 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms