RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CPEB3Q8NE35 698 aaKnown RBP12.12□□□□□ -0.47
CPSF1-201ENST00000526271 SLC30A7Q8NEW0 376 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 SLC47A1Q96FL8 570 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 ARHGDIGQ99819 225 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 TMEM43Q9BTV4 400 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 RMND5AQ9H871 391 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 HINT3Q9NQE9 182 aaKnown RBP12.12□□□□□ -0.47
CPSF1-201ENST00000526271 THUMPD1Q9NXG2 353 aaKnown RBP12.12□□□□□ -0.47
CPSF1-201ENST00000526271 RPS6KB2Q9UBS0 482 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 TESQ9UGI8 421 aaKnown RBP12.12□□□□□ -0.47
CPSF1-201ENST00000526271 NDUFAF1Q9Y375 327 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 PCDHGB1Q9Y5G3 927 aa12.12□□□□□ -0.47
CPSF1-201ENST00000526271 IGKV1D-43A0A0B4J1Z2 117 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 LOC100653049A0A140TA62 436 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 FBP2O00757 339 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 KRT34O76011 436 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 AHCYP23526 432 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 PRDX6P30041 224 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 WNT5AP41221 380 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 CRYBA2P53672 197 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 PCBP3P57721 371 aaKnown RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 UBA52P62987 128 aaKnown RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 GLO1Q04760 184 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 CYLC2Q14093 348 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 KRT72Q14CN4 511 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF74Q16587 644 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 HIST3H3Q16695 136 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 DUSP7Q16829 419 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 COQ5Q5HYK3 327 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 RGS7BPQ6MZT1 257 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 USP51Q70EK9 711 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 SLC35D2Q76EJ3 337 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF771Q7L3S4 317 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 PIWIL3Q7Z3Z3 882 aaKnown RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 RETREG3Q86VR2 466 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF101Q8IZC7 436 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 DPP10Q8N608 796 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 OR5J2Q8NH18 312 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 OR6X1Q8NH79 312 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 SGMS2Q8NHU3 365 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 LRRC58Q96CX6 371 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 NMD3Q96D46 503 aaKnown RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF48Q96MX3 618 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 SEPHS2Q99611 448 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF426Q9BUY5 554 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF416Q9BWM5 594 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 DENND2DQ9H6A0 471 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ARMC7Q9H6L4 198 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 NKIRAS2Q9NYR9 191 aa12.11□□□□□ -0.47
CPSF1-201ENST00000526271 LEF1Q9UJU2 399 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 SOX21Q9Y651 276 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-201ENST00000526271 ZSCAN5BA6NJL1 495 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF726A6NNF4 738 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 TRIM77I1YAP6 450 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 DHHO43323 396 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 MGRN1O60291 552 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ASAH2BP0C7U1 165 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ADORA3P0DMS8 318 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 COX4I1P13073 169 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 GPX2P18283 190 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 MPV17P39210 176 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 MMP15P51511 669 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 RGS8P57771 180 aaPredicted RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 RPS23P62266 143 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 GALK2Q01415 458 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ZP4Q12836 540 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 SCARB2Q14108 478 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 SELPLGQ14242 412 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 TSTQ16762 297 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 NKPD1Q17RQ9 610 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 KLF17Q5JT82 389 aaPredicted RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 REEP3Q6NUK4 255 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ACSM5Q6NUN0 579 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 SHQ1Q6PI26 577 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 DLEU7Q6UYE1 221 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 SNX32Q86XE0 403 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 SMYD1Q8NB12 490 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 DEFB108BQ8NET1 73 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 OR4K5Q8NGD3 323 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 OR6T1Q8NGN1 323 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 CMTM5Q96DZ9 223 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF347Q96SE7 839 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 PRSS27Q9BQR3 290 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 CPPED1Q9BRF8 314 aaPredicted RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 RBM4Q9BWF3 364 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ASPNQ9BXN1 380 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 MRPL13Q9BYD1 178 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 TMEM38AQ9H6F2 299 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 CACYBPQ9HB71 228 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 MEPEQ9NQ76 525 aaPredicted RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 MMP26Q9NRE1 261 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 ZNF346Q9UL40 294 aaKnown RBP12.1□□□□□ -0.47
CPSF1-201ENST00000526271 UGT2A1Q9Y4X1 527 aa12.1□□□□□ -0.47
CPSF1-201ENST00000526271 IGHV1-69-2A0A0G2JMI3 117 aa12.09□□□□□ -0.47
CPSF1-201ENST00000526271 BBIP1A8MTZ0 92 aa12.09□□□□□ -0.47
CPSF1-201ENST00000526271 ANGPT2O15123 496 aa12.09□□□□□ -0.47
CPSF1-201ENST00000526271 UBOX5O94941 541 aa12.09□□□□□ -0.47
CPSF1-201ENST00000526271 SNAP29O95721 258 aa12.09□□□□□ -0.47
CPSF1-201ENST00000526271 CH25HO95992 272 aa12.09□□□□□ -0.47
CPSF1-201ENST00000526271 NPPAP01160 153 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms