RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SHHQ15465 462 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 ZCWPW2Q504Y3 356 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 ENPP6Q6UWR7 440 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 SYCE1Q8N0S2 351 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 RIBC1Q8N443 379 aaPredicted RBP5.63□□□□□ -1.51
LSM1-202ENST00000520286 OR56B4Q8NH76 319 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 KCNG3Q8TAE7 436 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 RAB3IL1Q8TBN0 382 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 FAM110BQ8TC76 370 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 HAVCR1Q96D42 359 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 TBX15Q96SF7 602 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 RNF2Q99496 336 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 PCYOX1Q9UHG3 505 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 CA5BQ9Y2D0 317 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 FADS3Q9Y5Q0 445 aa5.63□□□□□ -1.51
LSM1-202ENST00000520286 COL2A1P02458 1487 aaPredicted RBP5.63□□□□□ -1.51
LSM1-202ENST00000520286 ZNF646O15015 1829 aaPredicted RBP5.62□□□□□ -1.51
LSM1-202ENST00000520286 HEATR9A2RTY3 570 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 KLHL41O60662 606 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 CCDC22O60826 627 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 SUPT3HO75486 399 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 SLITRK3O94933 977 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 GYG1P46976 350 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 LMO4P61968 165 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 CHRNB3Q05901 458 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 LRRC63Q05C16 580 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 GRB7Q14451 532 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 LRRC26Q2I0M4 334 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 FKBP1CQ5VVH2 108 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 NRMQ8IXM6 262 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 GTSF1Q8WW33 167 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 SERAC1Q96JX3 654 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 REEP4Q9H6H4 257 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 PISDQ9UG56 409 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 MTRF1LQ9UGC7 380 aaKnown RBP5.62□□□□□ -1.51
LSM1-202ENST00000520286 SLC7A8Q9UHI5 535 aa5.62□□□□□ -1.51
LSM1-202ENST00000520286 UNC80Q8N2C7 3258 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 SPTBN5Q9NRC6 3674 aaKnown RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 IQANK1A0A1B0GTG1 560 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 PVALEFA0A1B0GWK0 134 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 A0A1W2PPE3 182 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 BOLA2-SMG1P6H3BVE0 249 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 UPK3AO75631 287 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 GDF1P27539 372 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 CD1CP29017 333 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 RPL5P46777 297 aaKnown RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 HADHBP55084 474 aaKnown RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 LAMB2P55268 1798 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 PKNOX1P55347 436 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 TIMM10P62072 90 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 RELAQ04206 551 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 APOFQ13790 326 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 GK3PQ14409 553 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 Q1RN00 199 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 RNLSQ5VYX0 342 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 THOC7Q6I9Y2 204 aaKnown RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 APOBEC3HQ6NTF7 200 aaKnown RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 UGT2A3Q6UWM9 527 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 CXCL17Q6UXB2 119 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 IZUMO2Q6UXV1 221 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 DNM1P46Q6ZS02 220 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 PEX26Q7Z412 305 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 PAQR7Q86WK9 346 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 SDR9C7Q8NEX9 313 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 OR52H1Q8NGJ2 320 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 C12orf42Q96LP6 360 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 BIRC8Q96P09 236 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 SIKE1Q9BRV8 207 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 SPZ1Q9BXG8 430 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 SRXN1Q9BYN0 137 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 KRTAP9-8Q9BYQ0 159 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 NMUR2Q9GZQ4 415 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 ANKRD19PQ9H560 264 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 NMRAL1Q9HBL8 299 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 RAB20Q9NX57 234 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 KLHL28Q9NXS3 571 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 FAM32AQ9Y421 112 aaKnown RBP5.61□□□□□ -1.51
LSM1-202ENST00000520286 FLVCR1Q9Y5Y0 555 aa5.61□□□□□ -1.51
LSM1-202ENST00000520286 TCRBV9S1A1TA0A576 114 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 LAD1O00515 517 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 CASQ2O14958 399 aaPredicted RBP5.6□□□□□ -1.51
LSM1-202ENST00000520286 FKBP6O75344 327 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 FGGP02679 453 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 GAPDHP04406 335 aaKnown RBP5.6□□□□□ -1.51
LSM1-202ENST00000520286 IGLL1P15814 213 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 MDH2P40926 338 aaKnown RBP5.6□□□□□ -1.51
LSM1-202ENST00000520286 PTGDSP41222 190 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 PRRX1P54821 245 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 PLTPP55058 493 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 ENPEPQ07075 957 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 BST2Q10589 180 aaKnown RBP5.6□□□□□ -1.51
LSM1-202ENST00000520286 ASPHQ12797 758 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 DUSP7Q16829 419 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 TRMT5Q32P41 509 aaKnown RBP5.6□□□□□ -1.51
LSM1-202ENST00000520286 CCDC153Q494R4 210 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 PRAMEF20Q5VT98 475 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 OLFML2AQ68BL7 652 aa5.6□□□□□ -1.51
LSM1-202ENST00000520286 RNASEKQ6P5S7 137 aaKnown RBP5.6□□□□□ -1.51
LSM1-202ENST00000520286 ZNF571Q7Z3V5 609 aaPredicted RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms