RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 KRR1Q13601 381 aaKnown RBP12.47□□□□□ -0.41
NUP54-216ENST00000514901 TMEM179BQ7Z7N9 219 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 HIPK1Q86Z02 1210 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 OR5K1Q8NHB7 308 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 DNAJC9Q8WXX5 260 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 LURAP1Q96LR2 239 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 SNX18Q96RF0 628 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 TMEM204Q9BSN7 226 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 NTN4Q9HB63 628 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 VSX1Q9NZR4 365 aaPredicted RBP12.47□□□□□ -0.41
NUP54-216ENST00000514901 BAIAP2Q9UQB8 552 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 A0A1W2PR80 420 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 SLC22A23A1A5C7 686 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 DPRXA6NFQ7 191 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 PPP1R3DO95685 299 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 B4GALT1P15291 398 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 CBR1P16152 277 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 ARR3P36575 388 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 CAPZA2P47755 286 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 ZNF83P51522 516 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 MRPS34P82930 218 aaKnown RBP12.46□□□□□ -0.41
NUP54-216ENST00000514901 BSPH1Q075Z2 132 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 ZSCAN26Q16670 478 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 MESTQ5EB52 335 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 JAZF1Q86VZ6 243 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 DEPDC4Q8N2C3 294 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 SLC22A24Q8N4F4 322 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 ATG16L2Q8NAA4 619 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 CENPNQ96H22 339 aaPredicted RBP12.46□□□□□ -0.41
NUP54-216ENST00000514901 NIPSNAP1Q9BPW8 284 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 KCNN2Q9H2S1 579 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 EGLN3Q9H6Z9 239 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 PLEKHF2Q9H8W4 249 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 SIAEQ9HAT2 523 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 NPAP1Q9NZP6 1156 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 CRNNQ9UBG3 495 aaPredicted RBP12.46□□□□□ -0.41
NUP54-216ENST00000514901 FBXL3Q9UKT7 428 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 RNF115Q9Y4L5 304 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 PLCE1Q9P212 2302 aa12.46□□□□□ -0.41
NUP54-216ENST00000514901 POLQO75417 2590 aa12.46□□□□□ -0.42
NUP54-216ENST00000514901 G3V2T6 193 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 M0R1B8 84 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 SOCS2O14508 198 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 UBL3O95164 117 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 SLC2A10O95528 541 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 RENP00797 406 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 CD79AP11912 226 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 CD40P25942 277 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 CRABP1P29762 137 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 KRTAP10-9P60411 292 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 CLEC12AQ5QGZ9 265 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 ADAM5Q6NVV9 412 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 ZNF704Q6ZNC4 412 aaPredicted RBP12.45□□□□□ -0.42
NUP54-216ENST00000514901 ZDHHC13Q8IUH4 622 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 SVOPLQ8N434 492 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 LNX2Q8N448 690 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 IL17RDQ8NFM7 739 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 OR2T33Q8NG76 320 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 PYDC1Q8WXC3 89 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 LRTOMTQ8WZ04 291 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 NSMAFQ92636 917 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 RASD2Q96D21 266 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 SLC38A2Q96QD8 506 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 HS3ST6Q96QI5 342 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 TSSK6Q9BXA6 273 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 C1QTNF6Q9BXI9 259 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 TBC1D23Q9NUY8 699 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 B3GNT2Q9NY97 397 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 UGT2A1Q9Y4X1 527 aa12.45□□□□□ -0.42
NUP54-216ENST00000514901 BHLHE40O14503 412 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 KHDRBS3O75525 346 aaKnown RBP12.44□□□□□ -0.42
NUP54-216ENST00000514901 SEC14L2O76054 403 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 IGKV3-15P01624 115 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 IGLV1-44P01699 117 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 OSMP13725 252 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 HIST1H1CP16403 213 aaKnown RBP12.44□□□□□ -0.42
NUP54-216ENST00000514901 PRKACGP22612 351 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 CDKN2AP42771 156 aaKnown RBP12.44□□□□□ -0.42
NUP54-216ENST00000514901 FMODQ06828 376 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 GSG1Q2KHT4 349 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 SLC36A2Q495M3 483 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 FAM27BQ5VT28 67 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 DNM1P34Q6PK57 102 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 FOXL2NBQ6ZUU3 175 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 SLC16A14Q7RTX9 510 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 AMIGO2Q86SJ2 522 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 SKA3Q8IX90 412 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 HS3ST5Q8IZT8 346 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 TEX47Q8TBZ9 253 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 KCNS3Q9BQ31 491 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 WACQ9BTA9 647 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 OSBPL10Q9BXB5 764 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 SYT4Q9H2B2 425 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 KIF17Q9P2E2 1029 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 REV1Q9UBZ9 1251 aa12.44□□□□□ -0.42
NUP54-216ENST00000514901 ANKRD17O75179 2603 aaKnown RBP12.44□□□□□ -0.42
NUP54-216ENST00000514901 CREBBPQ92793 2442 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 HRNRQ86YZ3 2850 aaPredicted RBP12.43□□□□□ -0.42
NUP54-216ENST00000514901 IGKV1D-43A0A0B4J1Z2 117 aa12.43□□□□□ -0.42
NUP54-216ENST00000514901 H3BN98 237 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms