RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 GFERP55789 205 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 NR0B2Q15466 257 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 GLYR1Q49A26 553 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 NDUFAF7Q7L592 441 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 ABI3BPQ7Z7G0 1075 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 OR52B4Q8NGK2 314 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 OR14L1PQ8NHC6 308 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 LCORQ96JN0 433 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC22A7Q9Y694 548 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 A0A1B0GUH1 482 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ATG12O94817 140 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 UTS2O95399 124 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 PAPLNO95428 1278 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 CTRB1P17538 263 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 FAM189A2Q15884 450 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 CHRFAM7AQ494W8 412 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 CTRB2Q6GPI1 263 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF565Q8N9K5 539 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF587Q96SQ5 575 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 KCNIP3Q9Y2W7 256 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 BRINP1O60477 761 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 GAAP10253 952 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 APEHP13798 732 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ZFP36L2P47974 494 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 HCCSP53701 268 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 RBM39Q14498 530 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 OR4C15Q8NGM1 316 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ST7LQ8TDW4 575 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 RNF141Q8WVD5 230 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 TMEM231Q9H6L2 316 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 LSM5Q9Y4Y9 91 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 SPAG17Q6Q759 2223 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 A0A1W2PPC4 97 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ANKRD61A6NGH8 418 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 DCTDP32321 178 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 MVDP53602 400 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 SRYQ05066 204 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 SNTB1Q13884 538 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 VWA2Q5GFL6 755 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 AKR1C8PQ5T2L2 129 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 PRAMEF20Q5VT98 475 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF620Q6ZNG0 422 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 RCBTB1Q8NDN9 531 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 NAT6Q93015 286 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 C14orf79Q96F83 325 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ABHD1Q96SE0 405 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 SEMA4CQ9C0C4 833 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 WSB2Q9NYS7 404 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 CCL27Q9Y4X3 112 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF638Q14966 1978 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 CASP8AP2Q9UKL3 1982 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF749O43361 778 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 CRABP1P29762 137 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 TRHRP34981 398 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 MANEAQ5SRI9 462 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC6A19Q695T7 634 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ORAI1Q96D31 301 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 ALG12Q9BV10 488 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 PRDM7Q9NQW5 492 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 UNC13CQ8NB66 2214 aa14.93□□□□□ -0.02
CCDC88B-209ENST00000494080 LOC105371267A0A1B0GV96 52 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 TCRBV16S1A1N1A0A5B0 115 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 SULT2B1O00204 365 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 PHYHO14832 338 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 ACHEP22303 614 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 ADAM5Q6NVV9 412 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 PAPD4Q6PIY7 484 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 DPY19L4Q7Z388 723 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 CDH26Q8IXH8 852 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 SNIP1Q8TAD8 396 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 ELP5Q8TE02 316 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 NPRL2Q8WTW4 380 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 FAM71F1Q96KD3 344 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 Q96M85 177 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 MEGF11A6BM72 1044 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 COL9A1P20849 921 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 NME2P22392 152 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 IRF3Q14653 427 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 TCEAL6Q6IPX3 200 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 OR1M1Q8NGA1 313 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 STK35Q8TDR2 534 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 DERL3Q96Q80 235 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 PLXNA1Q9UIW2 1896 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 AIPO00170 330 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 ZFAND5O76080 213 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 C1QCP02747 245 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 CAPZA1P52907 286 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 DLX2Q07687 328 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 SSX9Q7RTT3 188 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 SMIM4Q8WVI0 70 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 TRMT61AQ96FX7 289 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 CEP250Q9BV73 2442 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 A0A0A6YYD5 115 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 P2RX6O15547 441 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 WNT1P04628 370 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 SPTBP11277 2137 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 CDK2P24941 298 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 BDKRB2P30411 391 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 OR2AK2Q8NG84 335 aa14.92□□□□□ -0.02
CCDC88B-209ENST00000494080 OR5M1Q8NGP8 315 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms