RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 PRAMEF25A6NGN4 478 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 ZNF98A6NK75 572 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 MARCH11A6NNE9 402 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 J3KTA2 159 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PRAMEF4O60810 478 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PAGE4O60829 102 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 IGKV3-11P04433 115 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 AMY2AP04746 511 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PNMTP11086 282 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 CPN1P15169 458 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PAX1P15863 534 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 AMY2BP19961 511 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 CRYGSP22914 178 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 HTR2AP28223 471 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 HTR6P50406 440 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 P2RY4P51582 365 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 CDKN2DP55273 166 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 ID2Q02363 134 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 CHRNB3Q05901 458 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 FOXF2Q12947 444 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 TOP3AQ13472 1001 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 TRIP13Q15645 432 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 C18orf21Q32NC0 220 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 IQCCQ4KMZ1 466 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 LBHQ53QV2 105 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 ACTBL2Q562R1 376 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 OR5M10Q6IEU7 315 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 DLEU7Q6UYE1 221 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 RAD9BQ6WBX8 426 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 LRRC74BQ6ZQY2 392 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PDIK1LQ8N165 341 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 GATSQ8NAP1 163 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 CPEB3Q8NE35 698 aaKnown RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 RNASE11Q8TAA1 199 aaKnown RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 KCNG3Q8TAE7 436 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 LHFPL5Q8TAF8 219 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 TBC1D15Q8TC07 691 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 KCTD4Q8WVF5 259 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 GTF2H4Q92759 462 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 MAGOHBQ96A72 148 aaKnown RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 ANKRD9Q96BM1 317 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 MRGPRX4Q96LA9 322 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 KLHL15Q96M94 604 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 RNF145Q96MT1 663 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 RILPQ96NA2 401 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 WFIKKN1Q96NZ8 548 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 GNRHR2Q96P88 292 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 SPAG8Q99932 426 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 CHRDL1Q9BU40 450 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 MED18Q9BUE0 208 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 SPATA5L1Q9BVQ7 753 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 MRPL13Q9BYD1 178 aaKnown RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 YIPF3Q9GZM5 350 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 MAGT1Q9H0U3 335 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PIGUQ9H490 435 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 TMEM231Q9H6L2 316 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 WDR76Q9H967 626 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 ACTR8Q9H981 624 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 ROPN1Q9HAT0 212 aaPredicted RBP6.04□□□□□ -1.44
HDAC3-209ENST00000486618 SLC2A8Q9NY64 477 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 AHSPQ9NZD4 102 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 TXNDC16Q9P2K2 825 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 UPB1Q9UBR1 384 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 PRSS50Q9UI38 385 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 NFU1Q9UMS0 254 aa6.04□□□□□ -1.44
HDAC3-209ENST00000486618 FBLL1A6NHQ2 334 aaKnown RBP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 FAM90A7PA6NKC0 464 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 ZNF729A6NN14 1252 aaPredicted RBP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 FAM90A22PA8MWA6 464 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 FAM90A12PA8MX19 464 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 DEFB108AA8MXU0 73 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 FAM90A23PA8MXZ1 464 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 RAB27BO00194 218 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 CDC7O00311 574 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 ARPC3O15145 178 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 EIF3HO15372 352 aaKnown RBP eCLIP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 CLOCKO15516 846 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 SELENOFO60613 162 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 WDR47O94967 919 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 LRATO95237 230 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 KRT75O95678 551 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 TTC4O95801 387 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 PLA2G1BP04054 148 aaKnown RBP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 CRHP06850 196 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 ZNF44P15621 663 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 SLC6A2P23975 617 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 SLCO1A2P46721 670 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 ATP5J2P56134 94 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 IGLV3-21P80748 117 aaPredicted RBP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 CDKL1Q00532 357 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 BDH1Q02338 343 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 SLC17A1Q14916 467 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 HIST2H2ACQ16777 129 aaPredicted RBP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 TRIM16LQ309B1 348 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 ANKRD55Q3KP44 614 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 EIPR1Q53HC9 387 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 KHDRBS2Q5VWX1 349 aaKnown RBP6.03□□□□□ -1.44
HDAC3-209ENST00000486618 TIGD3Q6B0B8 471 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 HIST2H2AA3Q6FI13 130 aa6.03□□□□□ -1.44
HDAC3-209ENST00000486618 OR2A2Q6IF42 318 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms