RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 B3GLCTQ6Y288 498 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 ZNF627Q7L945 461 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 MYPOPQ86VE0 399 aaPredicted RBP12.85□□□□□ -0.35
USP4-212ENST00000486549 SKA3Q8IX90 412 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 CCDC36Q8IYA8 594 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 SLC22A24Q8N4F4 322 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 ARIH2OSQ8N7S6 290 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 OR4C15Q8NGM1 316 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 GNPDA2Q8TDQ7 276 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 RASD2Q96D21 266 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 RBP7Q96R05 134 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 SH3GL3Q99963 347 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 OR52D1Q9H346 318 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 ZNF224Q9NZL3 707 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 CRNNQ9UBG3 495 aaPredicted RBP12.85□□□□□ -0.35
USP4-212ENST00000486549 MOKQ9UQ07 419 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 LAMP3Q9UQV4 416 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 HIVEP1P15822 2718 aa12.85□□□□□ -0.35
USP4-212ENST00000486549 E7EQL1 145 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 SOCS2O14508 198 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 GNGT2O14610 69 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 SMPD2O60906 423 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 FARS2O95363 451 aaKnown RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 PPP1R3DO95685 299 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 RAB36O95755 333 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 CST1P01037 141 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 IGKV3-15P01624 115 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 PATE4P0C8F1 98 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 OR8G3PP0DMU2 310 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 PAX7P23759 505 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 CDAP32320 146 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 ARR3P36575 388 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 GIPRP48546 466 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 GSSP48637 474 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 PTDSS1P48651 473 aaKnown RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 HMGA2P52926 109 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 KRR1Q13601 381 aaKnown RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 C10orf128Q5T292 105 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 C1orf94Q6P1W5 598 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 CCDC121Q6ZUS5 278 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 LRRC18Q8N456 261 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 SMAP2Q8WU79 429 aaPredicted RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 TMEM171Q8WVE6 324 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 NMD3Q96D46 503 aaKnown RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 SAMD8Q96LT4 415 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 GPX7Q96SL4 187 aaPredicted RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 TMUB1Q9BVT8 246 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 LRMDAQ9H2I8 198 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 MOV10Q9HCE1 1003 aaKnown RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 B3GNT2Q9NY97 397 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 IER3IP1Q9Y5U9 82 aa12.84□□□□□ -0.35
USP4-212ENST00000486549 TEP1Q99973 2627 aaKnown RBP12.84□□□□□ -0.35
USP4-212ENST00000486549 A0A1W2PPL8 197 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 TCRBV3S1A0A5B6 114 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 ENTPD5O75356 428 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 UBL3O95164 117 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 IGLV1-44P01699 117 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 CRYAAP02489 173 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 SOD3P08294 240 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 SDHAP31040 664 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 SLC6A6P31641 620 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 RPS6KA3P51812 740 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 RAB1AP62820 205 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 CBX1P83916 185 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 NAAAQ02083 359 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 TSPAN31Q12999 210 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 RFX4Q33E94 735 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 THEM4Q5T1C6 240 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 SHEQ5VZ18 495 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 SLC25A47Q6Q0C1 308 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 DPY19L2P2Q6ZN68 376 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 FAM122BQ7Z309 247 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 LINC00471Q8N535 108 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 AQP11Q8NBQ7 271 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 FGFBP3Q8TAT2 258 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 GTPBP3Q969Y2 492 aaKnown RBP12.83□□□□□ -0.36
USP4-212ENST00000486549 MS4A3Q96HJ5 214 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 ERMAPQ96PL5 475 aaPredicted RBP12.83□□□□□ -0.36
USP4-212ENST00000486549 IFT27Q9BW83 186 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 RERGLQ9H628 205 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 DENND2DQ9H6A0 471 aaPredicted RBP12.83□□□□□ -0.36
USP4-212ENST00000486549 EGLN3Q9H6Z9 239 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 RNF121Q9H920 327 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 SMURF2Q9HAU4 748 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 NRIP3Q9NQ35 241 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 UGT2A1Q9Y4X1 527 aa12.83□□□□□ -0.36
USP4-212ENST00000486549 MAP1AP78559 2803 aaPredicted RBP12.82□□□□□ -0.36
USP4-212ENST00000486549 PRRC2AP48634 2157 aaKnown RBP12.82□□□□□ -0.36
USP4-212ENST00000486549 TMCC2O75069 709 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 FKBP6O75344 327 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 GASTP01350 101 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 DANCRP0C864 163 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 CALCRP30988 508 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 FABP6P51161 128 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 ZNF133P52736 654 aaPredicted RBP12.82□□□□□ -0.36
USP4-212ENST00000486549 SGCAQ16586 387 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 MICAQ29983 383 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 PGGHGQ32M88 737 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 C3orf36Q3SXR2 165 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 C1orf146Q5VVC0 180 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms