RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CHRFAM7AQ494W8 412 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 UBE2NLQ5JXB2 153 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 PGAP1Q75T13 922 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 ZNF546Q86UE3 836 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 C12orf45Q8N5I9 185 aaPredicted RBP10.09□□□□□ -0.79
HDAC6-228ENST00000486227 OR10K1Q8NGX5 313 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 CD300LFQ8TDQ1 290 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 NECAB3Q96P71 396 aaPredicted RBP10.09□□□□□ -0.79
HDAC6-228ENST00000486227 OR2A5Q96R48 311 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 CDCP1Q9H5V8 836 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 ANKRD10Q9NXR5 420 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 SLC23A1Q9UHI7 598 aa10.09□□□□□ -0.79
HDAC6-228ENST00000486227 A8MVM7 634 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 VEGFCP49767 419 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 HERV-K104P61576 105 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 TPBGQ13641 420 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ZNF362Q5T0B9 420 aaPredicted RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 VN1R4Q7Z5H5 301 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ABHD4Q8TB40 342 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 SYNPRQ8TBG9 265 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 MVB12AQ96EY5 273 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 C20orf85Q9H1P6 137 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 MEPEQ9NQ76 525 aaPredicted RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 VSX1Q9NZR4 365 aaPredicted RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 MOKQ9UQ07 419 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ADAM18Q9Y3Q7 739 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ZNF638Q14966 1978 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 LILRA5A6NI73 299 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 RAD51DO75771 328 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 GABRB1P18505 474 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 AMY2BP19961 511 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 SPOCK1Q08629 439 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 MRPL21Q7Z2W9 205 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 GPR155Q7Z3F1 870 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ULBP2Q9BZM5 246 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 SULT1C2O00338 296 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 SCGB1D2O95969 90 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 CCR9P51686 369 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 CLDN12P56749 244 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 C1orf140Q5VVS0 124 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 CCDC74BQ96LY2 380 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 KIF25Q9UIL4 384 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 YARS2Q9Y2Z4 477 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ZDBF2Q9HCK1 2354 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 AHCTF1Q8WYP5 2266 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 SPAG17Q6Q759 2223 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 EEF1E1-BLOC1S5C9J1V9 151 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 DNAJB6O75190 326 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 RAB3DO95716 219 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 BIDP55957 195 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 PPP1CAP62136 330 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 CYCSP99999 105 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 EIF3IQ13347 325 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 RBMS2Q15434 407 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 GLYR1Q49A26 553 aaPredicted RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 C5orf46Q6UWT4 87 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 KANSL1Q7Z3B3 1105 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 PRSS42Q7Z5A4 293 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 PXT1Q8NFP0 134 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 OR4N2Q8NGD1 307 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 ZG16BQ96DA0 208 aa10.08□□□□□ -0.8
HDAC6-228ENST00000486227 TPRP12270 2363 aaKnown RBP10.08□□□□□ -0.8
HDAC6-228ENST00000486227 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 PLSCR5A0PG75 271 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 TOR1AO14656 332 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 GIPP09681 153 aaPredicted RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 SBK2P0C263 348 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 EIF1P41567 113 aaKnown RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 FCRLAQ7L513 359 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 GPBAR1Q8TDU6 330 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 GIMAP5Q96F15 307 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 HCAR1Q9BXC0 346 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 MEIS3P1A6NDR6 274 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 DOK2O60496 412 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 EIF4E2O60573 245 aaKnown RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 TPT1P13693 172 aaKnown RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 SORDQ00796 357 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 ZNF169Q14929 603 aaPredicted RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 MLC1Q15049 377 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 DHRS13Q6UX07 377 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 SSX6Q7RTT6 188 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 SIRT6Q8N6T7 355 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 ASB17Q8WXJ9 295 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 PIGQQ9BRB3 760 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 C12orf10Q9HB07 376 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 BRCA1P38398 1863 aaKnown RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 IGHV1OR15-9A0A0B4J2B8 117 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 PRAMEF25A6NGN4 478 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 SELENOFO60613 162 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 TBX19O60806 448 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 TNFSF4P23510 183 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 AGERQ15109 404 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 NKPD1Q17RQ9 610 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 KRBOX4Q5JUW0 171 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 TMEM99Q8N816 258 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 TMEM106AQ96A25 262 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 ZNF587Q96SQ5 575 aaPredicted RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 DNTTIP1Q9H147 329 aa10.07□□□□□ -0.8
HDAC6-228ENST00000486227 RBMXP38159 391 aaKnown RBP10.07□□□□□ -0.8
HDAC6-228ENST00000486227 CLDN17P56750 224 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms