RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 AGAP6Q5VW22 663 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 GPR139Q6DWJ6 353 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 OR2T5Q6IEZ7 315 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 LCN8Q6JVE9 175 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 TBPL2Q6SJ96 375 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 PAMR1Q6UXH9 720 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 SLC46A3Q7Z3Q1 461 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 PIWIL3Q7Z3Z3 882 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 DPPA2Q7Z7J5 298 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 MEX3DQ86XN8 651 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 AQP12AQ8IXF9 295 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 C20orf196Q8IYI0 205 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 LRRC18Q8N456 261 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 IL17RDQ8NFM7 739 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 OR1J2Q8NGS2 313 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 OR2T29Q8NH02 315 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 MOSPD2Q8NHP6 518 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 TEX47Q8TBZ9 253 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 NINJ1Q92982 152 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 ERMAPQ96PL5 475 aaPredicted RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 SLC38A2Q96QD8 506 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 TNFRSF13CQ96RJ3 184 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 ALG12Q9BV10 488 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 CDADC1Q9BWV3 514 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 MRPL18Q9H0U6 180 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 GSX1Q9H4S2 264 aaPredicted RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 CCM2LQ9NUG4 571 aaPredicted RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 CISD1Q9NZ45 108 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 EIF3KQ9UBQ5 218 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 ING1Q9UK53 422 aaPredicted RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 ADAM30Q9UKF2 790 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 ZNF346Q9UL40 294 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 ORC6Q9Y5N6 252 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 PMF1-BGLAPU3KQ54 211 aa7.05□□□□□ -1.28
USP40-216ENST00000485943 UTP20O75691 2785 aaKnown RBP7.05□□□□□ -1.28
USP40-216ENST00000485943 TRBV4-1A0A0J9YWV2 114 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 CENPBD1B2RD01 187 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 HS3ST1O14792 307 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 MGRN1O60291 552 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 TRMUO75648 421 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 ZNF432O94892 652 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 HPRP00739 348 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 IFNGP01579 166 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 THY1P04216 161 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 CD14P08571 375 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 FCGR1AP12314 374 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 PAICSP22234 425 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 CD40P25942 277 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 POU1F1P28069 291 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 CRABP1P29762 137 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 P2RY4P51582 365 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 PCBD1P61457 104 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 RPS23P62266 143 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 SNRPD2P62316 118 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 RPS4XP62701 263 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 TUBA1BP68363 451 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 TUBA4AP68366 448 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 LGALS3BPQ08380 585 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 BNIP1Q12981 228 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 KRR1Q13601 381 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 TBC1D28Q2M2D7 210 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 NCMAPQ5T1S8 102 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ARL9Q6T311 187 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 TMPRSS11FQ6ZWK6 438 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 TUBA1AQ71U36 451 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 FAM86B1Q8N7N1 296 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ZIC4Q8N9L1 334 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ATG16L2Q8NAA4 619 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 AQP11Q8NBQ7 271 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 SLC7A13Q8TCU3 470 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 GIPC3Q8TF64 312 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ASB10Q8WXI3 467 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 STMN2Q93045 179 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 PERPQ96FX8 193 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 MUS81Q96NY9 551 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 FANCD2OSQ96PS1 177 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 BDH2Q9BUT1 245 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ZNF426Q9BUY5 554 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 CHID1Q9BWS9 393 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 PRRG3Q9BZD7 231 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 C1orf198Q9H425 327 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 DYNLRB1Q9NP97 96 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 TAS2R5Q9NYW4 299 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 B3GAT1Q9P2W7 334 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 GPR160Q9UJ42 338 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 LAMP3Q9UQV4 416 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 IER3IP1Q9Y5U9 82 aa7.04□□□□□ -1.28
USP40-216ENST00000485943 ASH1LQ9NR48 2969 aaKnown RBP7.04□□□□□ -1.28
USP40-216ENST00000485943 DSCAMO60469 2012 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 TEX13CA0A0J9YWL9 993 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 SLC22A23A1A5C7 686 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 RIIAD1A6NNX1 92 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 C12orf71A8MTZ7 269 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 F8W735 103 aaPredicted RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 GSC2O15499 205 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 TMCC2O75069 709 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 KHDRBS3O75525 346 aaKnown RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 PPP1R3DO95685 299 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 MT-ND5P03915 603 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms