RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 VIMP08670 466 aaKnown RBP18.48■□□□□ 0.55
USP40-215ENST00000484528 TROVE2P10155 538 aaKnown RBP eCLIP18.48■□□□□ 0.55
USP40-215ENST00000484528 RBM34P42696 430 aaKnown RBP18.48■□□□□ 0.55
USP40-215ENST00000484528 ZNF84P51523 738 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 ARFIP2P53365 341 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 CDH15P55291 814 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 NKPD1Q17RQ9 610 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 SLC36A2Q495M3 483 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 RGS7BPQ6MZT1 257 aaPredicted RBP18.48■□□□□ 0.55
USP40-215ENST00000484528 CGB2Q6NT52 195 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 ICA1LQ8NDH6 482 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 RBM15BQ8NDT2 890 aaKnown RBP18.48■□□□□ 0.55
USP40-215ENST00000484528 C10orf82Q8WW14 230 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 TMEM239Q8WW34 195 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 YIPF5Q969M3 257 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 ZNF583Q96ND8 569 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 TSPAN32Q96QS1 320 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 INIPQ9NRY2 104 aa18.48■□□□□ 0.55
USP40-215ENST00000484528 LOC100653049A0A140TA62 436 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 TRMUO75648 421 aaKnown RBP18.47■□□□□ 0.55
USP40-215ENST00000484528 KRT34O76011 436 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 LCKP06239 509 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 ACADSP16219 412 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 GPR6P46095 362 aaPredicted RBP18.47■□□□□ 0.55
USP40-215ENST00000484528 DAP3P51398 398 aaKnown RBP18.47■□□□□ 0.55
USP40-215ENST00000484528 FMODQ06828 376 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 HIST3H3Q16695 136 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 CYBRD1Q53TN4 286 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 ERICH5Q6P6B1 374 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 RINLQ6ZS11 566 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 RDH5Q92781 318 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 C19orf24Q9BVV8 132 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 MRPL13Q9BYD1 178 aaKnown RBP18.47■□□□□ 0.55
USP40-215ENST00000484528 SAR1AQ9NR31 198 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 TAAR3PQ9P1P4 343 aa18.47■□□□□ 0.55
USP40-215ENST00000484528 TMEFF2Q9UIK5 374 aaPredicted RBP18.47■□□□□ 0.55
USP40-215ENST00000484528 WNT9BO14905 357 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 ACHEP22303 614 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 CDAP32320 146 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 THBS2P35442 1172 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 MAGEB1P43366 347 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 TOP3AQ13472 1001 aaPredicted RBP18.46■□□□□ 0.55
USP40-215ENST00000484528 TBC1D28Q2M2D7 210 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 COQ5Q5HYK3 327 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 CLDND2Q8NHS1 167 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 TPD52L3Q96J77 140 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 SEPHS2Q99611 448 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 LPAR2Q9HBW0 351 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 ZNF275Q9NSD4 429 aaPredicted RBP18.46■□□□□ 0.55
USP40-215ENST00000484528 ZNF346Q9UL40 294 aaKnown RBP18.46■□□□□ 0.55
USP40-215ENST00000484528 MED31Q9Y3C7 131 aa18.46■□□□□ 0.55
USP40-215ENST00000484528 WNK2Q9Y3S1 2297 aa18.46■□□□□ 0.54
USP40-215ENST00000484528 IQCMA0A1B0GVH7 501 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 BBIP1A8MTZ0 92 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 IFNA14P01570 189 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 FUT4P22083 530 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 SRP14P37108 136 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 KLF3P57682 345 aaPredicted RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 HSF2Q03933 536 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 GLO1Q04760 184 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 CD47Q08722 323 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 LAPTM4AQ15012 233 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 MAPRE2Q15555 327 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 ARMC4Q5T2S8 1044 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 MEX3DQ86XN8 651 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 SYNPRQ8TBG9 265 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 NSMAFQ92636 917 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 GTF3AQ92664 365 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 HDAC2Q92769 488 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 POLR2J2Q9GZM3 115 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 POLR2J3Q9H1A7 115 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 C1orf198Q9H425 327 aa18.45■□□□□ 0.54
USP40-215ENST00000484528 GMPR2Q9P2T1 348 aaKnown RBP18.45■□□□□ 0.54
USP40-215ENST00000484528 IGKV1D-43A0A0B4J1Z2 117 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 FAM220BPB1ANY3 271 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 PPIHO43447 177 aaKnown RBP18.44■□□□□ 0.54
USP40-215ENST00000484528 CDC14BO60729 498 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 MMP7P09237 267 aaPredicted RBP18.44■□□□□ 0.54
USP40-215ENST00000484528 SAGP10523 405 aaPredicted RBP18.44■□□□□ 0.54
USP40-215ENST00000484528 CCNOP22674 350 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 PLP2Q04941 152 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 PABPC1L2AQ5JQF8 200 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 C10orf128Q5T292 105 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 HDDC2Q7Z4H3 204 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 DPPA2Q7Z7J5 298 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 OR2T12Q8NG77 320 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 C1orf159Q96HA4 380 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 TREM2Q9NZC2 230 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 UGT2A1Q9Y4X1 527 aa18.44■□□□□ 0.54
USP40-215ENST00000484528 SLC22A23A1A5C7 686 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 FAM157AC9JC47 383 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 RP2O75695 350 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 SNAP29O95721 258 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 NPPAP01160 153 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 PTHP01270 115 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 IFI30P13284 250 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 KDELR2P33947 212 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 APLNRP35414 380 aa18.43■□□□□ 0.54
USP40-215ENST00000484528 YAP1P46937 504 aaKnown RBP18.43■□□□□ 0.54
USP40-215ENST00000484528 UCP2P55851 309 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms