RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 UBCP0CG48 685 aaKnown RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 HPGDP15428 266 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SERPINB5P36952 375 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ACTA2P62736 377 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ACTG2P63267 376 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ACTC1P68032 377 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ACTA1P68133 377 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SLC25A11Q02978 314 aaKnown RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ECH1Q13011 328 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 NCF4Q15080 339 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SLC1A5Q15758 541 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 RNF165Q6ZSG1 346 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ZBED8Q8IZ13 594 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 TMEM61Q8N0U2 210 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 OR2G3Q8NGZ4 309 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 OR52E5Q8NH55 327 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 OR5K2Q8NHB8 316 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF502Q8TBZ5 544 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 MARC2Q969Z3 335 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 MAGEB18Q96M61 343 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ZYG11BQ9C0D3 744 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ACTR3CQ9C0K3 210 aaPredicted RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 CHRAC1Q9NRG0 131 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SAMSN1Q9NSI8 373 aaKnown RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 MTRF1LQ9UGC7 380 aaKnown RBP3.64□□□□□ -1.83
UPF3B-203ENST00000478840 RHBDD3Q9Y3P4 386 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 SAR1BQ9Y6B6 198 aa3.64□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF701M0R085 212 aaPredicted RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 M0R3G1 203 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CCNB2O95067 398 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CD160O95971 181 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 HLA-HP01893 362 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CT45A6P0DMU7 189 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CT45A5P0DMU8 189 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CT45A7P0DMV0 189 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 IGHV3-43DP0DP04 118 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CTRB1P17538 263 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CRISP1P54107 249 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 FGF8P55075 233 aaPredicted RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 PRPS1P60891 318 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 ORC2Q13416 577 aaPredicted RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 AQP6Q13520 282 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 TRAM2Q15035 370 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CT45A1Q5HYN5 189 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 OTPQ5XKR4 325 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 SPINK14Q6IE38 97 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF544Q6NX49 715 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 H3F3CQ6NXT2 135 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 LINC00523Q86TU6 105 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 THOC6Q86W42 341 aaKnown RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 C11orf42Q8N5U0 333 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 OR4F15Q8NGB8 312 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 CT45A3Q8NHU0 189 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 FANK1Q8TC84 345 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 SDR42E1Q8WUS8 393 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 NDRG1Q92597 394 aaKnown RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 MYDGFQ969H8 173 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 SLC35E1Q96K37 410 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 UCK2Q9BZX2 261 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 EML4Q9HC35 981 aaKnown RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 PXMP2Q9NR77 195 aa3.63□□□□□ -1.83
UPF3B-203ENST00000478840 STOX2Q9P2F5 926 aaPredicted RBP3.63□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF816-ZNF321PA0A0X1KG74 233 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 LYRM9A8MSI8 78 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 HDAC3O15379 428 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 NPIPB7O75200 414 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 FCN3O75636 299 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 AQP8O94778 261 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 CSF3P09919 207 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 ACSM4P0C7M7 580 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF250P15622 560 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 U2AF2P26368 475 aaKnown RBP eCLIP3.62□□□□□ -1.83
UPF3B-203ENST00000478840 HTR1EP28566 365 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 GPX4P36969 197 aaPredicted RBP3.62□□□□□ -1.83
UPF3B-203ENST00000478840 NUP107P57740 925 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 LYZP61626 148 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 TIMM10P62072 90 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 DNAJC3Q13217 504 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 CLINT1Q14677 625 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 WDR43Q15061 677 aaKnown RBP eCLIP3.62□□□□□ -1.83
UPF3B-203ENST00000478840 SGCAQ16586 387 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 LRRC10Q5BKY1 277 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 H2AFVQ71UI9 128 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 VTCN1Q7Z7D3 282 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 TGIF2LYQ8IUE0 185 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 C20orf203Q8NBC4 194 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 OR56A4Q8NGH8 313 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 OR5B3Q8NH48 314 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 LINC01006Q8NI28 216 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 ANKRD9Q96BM1 317 aaPredicted RBP3.62□□□□□ -1.83
UPF3B-203ENST00000478840 LRRC58Q96CX6 371 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 C9orf72Q96LT7 481 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 P2RX4Q99571 388 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 MYEF2Q9P2K5 600 aaKnown RBP3.62□□□□□ -1.83
UPF3B-203ENST00000478840 KIF25-AS1Q9Y6Z4 181 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 MAPK8IP3Q9UPT6 1336 aa3.62□□□□□ -1.83
UPF3B-203ENST00000478840 COL2A1P02458 1487 aaPredicted RBP3.61□□□□□ -1.83
UPF3B-203ENST00000478840 ARHGAP23Q9P227 1491 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 A0A0J9YYE9 177 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 A0A1W2PRD5 423 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms