RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C10orf128Q5T292 105 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 CYB5R2Q6BCY4 276 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 CLDN22Q8N7P3 220 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 SYT3Q9BQG1 590 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 RAB1BQ9H0U4 201 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 MYOZ1Q9NP98 299 aaPredicted RBP12.12□□□□□ -0.47
UPF3A-204ENST00000475218 INIPQ9NRY2 104 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 MED31Q9Y3C7 131 aa12.12□□□□□ -0.47
UPF3A-204ENST00000475218 LRP5LA4QPB2 252 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 NPIPB13A6NJU9 1138 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 NPIPB4C9JG80 1138 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 EBAG9O00559 213 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 LILRA1O75019 489 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 ZNF26P17031 533 aaPredicted RBP12.11□□□□□ -0.47
UPF3A-204ENST00000475218 IL2RGP31785 369 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 CDAP32320 146 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 EVX1P49640 407 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 GSK3BP49841 420 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 SLC7A2P52569 658 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 SEC24CP53992 1094 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 CLRN1P58418 232 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 RIN1Q13671 783 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 CARTPTQ16568 116 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 OFCC1Q8IZS5 231 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 ZNF786Q8N393 782 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 RBM15BQ8NDT2 890 aaKnown RBP12.11□□□□□ -0.47
UPF3A-204ENST00000475218 BPIFA2Q96DR5 249 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 KCNK17Q96T54 332 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 TMEM160Q9NX00 188 aa12.11□□□□□ -0.47
UPF3A-204ENST00000475218 A0A1W2PRG6 482 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 CENPBD1B2RD01 187 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 CXCR6O00574 342 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 SYNGR3O43761 229 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ZNF23P17027 643 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 IGFBP5P24593 272 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ALDH3B1P43353 468 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ERVS71-1P61550 626 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 NRN1LQ496H8 165 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 TMEM255AQ5JRV8 349 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ELFN2Q5R3F8 820 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 CBLL1Q75N03 491 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 IGFN1Q86VF2 1251 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 CPEB3Q8NE35 698 aaKnown RBP12.1□□□□□ -0.47
UPF3A-204ENST00000475218 NEU4Q8WWR8 484 aaPredicted RBP12.1□□□□□ -0.47
UPF3A-204ENST00000475218 TSPAN32Q96QS1 320 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 MYLK2Q9H1R3 596 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 DYNLRB1Q9NP97 96 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 STAB1Q9NY15 2570 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 MGRN1O60291 552 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 IGHMP01871 453 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 TACSTD2P09758 323 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 IFI30P13284 250 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 DAP3P51398 398 aaKnown RBP12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ST3GAL3Q11203 375 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 TRIP10Q15642 601 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 CHRFAM7AQ494W8 412 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 SLC25A47Q6Q0C1 308 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 CXXC5Q7LFL8 322 aaKnown RBP12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ARPINQ7Z6K5 226 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 NRMQ8IXM6 262 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 SLC30A7Q8NEW0 376 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 ZNF519Q8TB69 540 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 TXNIPQ9H3M7 391 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 REV1Q9UBZ9 1251 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 SLC7A8Q9UHI5 535 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 FBXO9Q9UK97 447 aaPredicted RBP12.1□□□□□ -0.47
UPF3A-204ENST00000475218 FBXL3Q9UKT7 428 aa12.1□□□□□ -0.47
UPF3A-204ENST00000475218 A0A087WUU8 490 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 MCIDASD6RGH6 385 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 CDC42EP2O14613 210 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 NCR1O76036 304 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 CLPTM1O96005 669 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 HPXP02790 462 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 FAM157BP0CG42 384 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 NCK1P16333 377 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 TCN1P20061 433 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-204ENST00000475218 GZMKP49863 264 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 MRPS34P82930 218 aaKnown RBP12.09□□□□□ -0.47
UPF3A-204ENST00000475218 PRKCDQ05655 676 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 ALG10Q5BKT4 473 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 TBPL2Q6SJ96 375 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 HACD2Q6Y1H2 254 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 SLC16A14Q7RTX9 510 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 LRRC18Q8N456 261 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 OR13C2Q8NGS9 318 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 UBASH3BQ8TF42 649 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 ABCD2Q9UBJ2 740 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 CDC42EP3Q9UKI2 254 aa12.09□□□□□ -0.47
UPF3A-204ENST00000475218 ZNF346Q9UL40 294 aaKnown RBP12.09□□□□□ -0.47
UPF3A-204ENST00000475218 TRAV27A0A087WT01 109 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 VSTM5A8MXK1 200 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 M0R233 179 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 LMX1BO60663 402 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 CCDC22O60826 627 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 SNAP29O95721 258 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF682O95780 498 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 SERPINA1P01009 418 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 IFNW1P05000 195 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 FAM157CP0CG43 387 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 APEHP13798 732 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms