RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ERI1Q8IV48 349 aaKnown RBP11.43□□□□□ -0.58
VPS13D-205ENST00000473099 TIGD4Q8IY51 512 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF485Q8NCK3 441 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 UFD1Q92890 307 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 C12orf43Q96C57 262 aaKnown RBP11.43□□□□□ -0.58
VPS13D-205ENST00000473099 TXNDC15Q96J42 360 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 OPALINQ96PE5 141 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 TSSK2Q96PF2 358 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF649Q9BS31 505 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 WDR76Q9H967 626 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 TRIM36Q9NQ86 728 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 PTTG2Q9NZH5 202 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 KLHL9Q9P2J3 617 aa11.43□□□□□ -0.58
VPS13D-205ENST00000473099 SVILO95425 2214 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 A0A1W2PQL4 384 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-205ENST00000473099 H3BMQ9 156 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 SLC22A1O15245 554 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 SELENOFO60613 162 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 HLA-DQA2P01906 255 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 TFP02787 698 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 CTLA4P16410 223 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 PSMA1P25786 263 aaKnown RBP11.42□□□□□ -0.58
VPS13D-205ENST00000473099 LIPAP38571 399 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 NAA10P41227 235 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-205ENST00000473099 CAMK2DQ13557 499 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 TPBGQ13641 420 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 HIST3H3Q16695 136 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 TSTQ16762 297 aaKnown RBP11.42□□□□□ -0.58
VPS13D-205ENST00000473099 CDONQ4KMG0 1287 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 OR2G6Q5TZ20 316 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 C19orf48Q6RUI8 117 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 FCRLAQ7L513 359 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 CDC20BQ86Y33 519 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF454Q8N9F8 522 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF511Q8NB15 262 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 SYT14Q8NB59 555 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 SPRYD4Q8WW59 207 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-205ENST00000473099 ASB17Q8WXJ9 295 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 SLC39A7Q92504 469 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 DCBLD2Q96PD2 775 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 UCN2Q96RP3 112 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 TBX5Q99593 518 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 RERGLQ9H628 205 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 RNF122Q9H9V4 155 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 NDUFB11Q9NX14 153 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 BABAM2Q9NXR7 383 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 EMC3Q9P0I2 261 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 KCNG2Q9UJ96 466 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 LAMP5Q9UJQ1 280 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 CSAG2Q9Y5P2 127 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 FREM1Q5H8C1 2179 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 CACNA1GO43497 2377 aa11.42□□□□□ -0.58
VPS13D-205ENST00000473099 ANKRD11Q6UB99 2663 aaPredicted RBP11.42□□□□□ -0.58
VPS13D-205ENST00000473099 IGKV3D-15A0A087WSY6 115 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 IGHV3-15A0A0B4J1V0 119 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 A0A1B0GVC2 190 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TRIM64BA6NI03 449 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF716A6NP11 495 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 AQP7O14520 342 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 RAMP1O60894 148 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TMCC2O75069 709 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ITGB2P05107 769 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TACSTD2P09758 323 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF823P16415 610 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 CD53P19397 219 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 PTGS2P35354 604 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 CSNK1A1P48729 337 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ENTPD1P49961 510 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF133P52736 654 aaPredicted RBP11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF85Q03923 595 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 RUNX1T1Q06455 604 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 EGR3Q06889 387 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 RASGEF1BQ0VAM2 473 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 RNPS1Q15287 305 aaKnown RBP11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TRAM1Q15629 374 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TEX30Q5JUR7 227 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 SLC16A12Q6ZSM3 486 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 FAM220AQ7Z4H9 259 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 GLB1L2Q8IW92 636 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 OR6N2Q8NGY6 317 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 SNX33Q8WV41 574 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 SNRNP27Q8WVK2 155 aaKnown RBP11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ZNRF4Q8WWF5 429 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 GATAD2BQ8WXI9 593 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TMEM54Q969K7 222 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 TMEM45BQ96B21 275 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 NMD3Q96D46 503 aaKnown RBP11.41□□□□□ -0.58
VPS13D-205ENST00000473099 COQ7Q99807 217 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 EMC6Q9BV81 110 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 DEFB127Q9H1M4 99 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 GP6Q9HCN6 339 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 B3GAT2Q9NPZ5 323 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF175Q9Y473 711 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 FLVCR1Q9Y5Y0 555 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 FAM208BQ5VWN6 2430 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 PKD1L2Q7Z442 2459 aa11.41□□□□□ -0.58
VPS13D-205ENST00000473099 OR6C65A6NJZ3 312 aa11.4□□□□□ -0.58
VPS13D-205ENST00000473099 FAM171A2A8MVW0 826 aa11.4□□□□□ -0.58
VPS13D-205ENST00000473099 H0YC42 278 aa11.4□□□□□ -0.58
VPS13D-205ENST00000473099 AIREO43918 545 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms