RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ADAM5Q6NVV9 412 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 GALNT16Q8N428 558 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 SLC39A7Q92504 469 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 CCKARP32238 428 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GPM6BQ13491 265 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 PADI1Q9ULC6 663 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 SSUH2Q9Y2M2 353 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GPR75O95800 540 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 F2RP25116 425 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 OSTM1Q86WC4 334 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 DTX3Q8N9I9 347 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 PDCD1LG2Q9BQ51 273 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 VN1R3Q9BXE9 311 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 RAB18Q9NP72 206 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 PRSS16Q9NQE7 514 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 DLL4Q9NR61 685 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 TAS2R5Q9NYW4 299 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 IL17CQ9P0M4 197 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 EMCNQ9ULC0 261 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GATCO43716 136 aaKnown RBP12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GASTP01350 101 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 TPOP07202 933 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 HYAL2Q12891 473 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 YOD1Q5VVQ6 348 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-209ENST00000472056 WDTC1Q8N5D0 677 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GJC3Q8NFK1 279 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 OR11L1Q8NGX0 322 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 IL1F10Q8WWZ1 152 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 HLA-CQ95604 372 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 NEIL2Q969S2 332 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 OR2A14Q96R47 310 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 LMAN1LQ9HAT1 526 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 AK3Q9UIJ7 227 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 NDRG4Q9ULP0 352 aaKnown RBP12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GBF1Q92538 1859 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 NRAPQ86VF7 1730 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 C17orf105B2RV13 164 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GLCEO94923 617 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 UBE2G1P62253 170 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 HHEXQ03014 270 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 IHHQ14623 411 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 BOLLQ8N9W6 283 aaKnown RBP12.31□□□□□ -0.44
COL6A3-209ENST00000472056 BPIFCQ8NFQ6 507 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 DYNC2LI1Q8TCX1 351 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 MAP3K3Q99759 626 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 OR14J1Q9UGF5 321 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 TRAV1-2A0A0B4J238 106 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 SELEP16581 610 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 ARSDP51689 593 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 APH1AQ96BI3 265 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 SLC35A4Q96G79 324 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 SLC17A9Q9BYT1 436 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GOLT1BQ9Y3E0 138 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 DOCK1Q14185 1865 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 IL5P05113 134 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GM2AP17900 193 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 GPX2P18283 190 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 NME2P22392 152 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 NOL4LQ96MY1 436 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-209ENST00000472056 HRASLSQ9HDD0 168 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF724A8MTY0 619 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 PHF1O43189 567 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-209ENST00000472056 TMEM64Q6YI46 380 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 DGAT2L6Q6ZPD8 337 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 SMIM19Q96E16 107 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 SNX11Q9Y5W9 270 aa12.31□□□□□ -0.44
COL6A3-209ENST00000472056 LRRC30A6NM36 301 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 SCGB1C2P0DMR2 95 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 EPHA4P54764 986 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 MTURNQ8N3F0 131 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 TRAPPC4Q9Y296 219 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 MTHFD2P13995 350 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CRMP1Q14194 572 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 SMIM12Q96EX1 92 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ARHGDIGQ99819 225 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 TRBV4-1A0A0J9YWV2 114 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 TMEM88BA6NKF7 163 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 GLAP06280 429 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 RPL17P18621 184 aaKnown RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 VIPR2P41587 438 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 C17orf67Q0P5P2 114 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 RTL8BQ17RB0 113 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ARHGEF39Q8N4T4 335 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 REEP6Q96HR9 211 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 BARHL1Q9BZE3 327 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CSAG2Q9Y5P2 127 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ARFGEF3Q5TH69 2177 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ELOA3CA0A087WX78 387 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 PTHLHP12272 177 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CTRB1P17538 263 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 PNRC1Q12796 327 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 PNLIPRP3Q17RR3 467 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CTRB2Q6GPI1 263 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 GPX8Q8TED1 209 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 SLC25A43Q8WUT9 341 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 A0A0A6YYJ9 748 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 BCL2L11O43521 198 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ZFAND5O76080 213 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 USF1P22415 310 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 NKX2-1P43699 371 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms