RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 IL1RL1Q01638 556 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 MAB21L1Q13394 359 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 DPYSL2Q16555 572 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 TPD52L1Q16890 204 aaPredicted RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 KLHL38Q2WGJ6 581 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 PHYHD1Q5SRE7 291 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CNSTQ6PJW8 725 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 SPINT4Q6UDR6 99 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 TMEM179Q6ZVK1 233 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ABHD13Q7L211 337 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ECHDC2Q86YB7 292 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CALHM1Q8IU99 346 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 NUDCD3Q8IVD9 361 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ZNF683Q8IZ20 524 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 PUSL1Q8N0Z8 303 aaKnown RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ANKFN1Q8N957 763 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 MFSD9Q8NBP5 474 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 NOXO1Q8NFA2 376 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 OR5D13Q8NGL4 314 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 OR1P1Q8NH06 330 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 COQ8AQ8NI60 647 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 LINC01560Q8TB33 94 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CCDC110Q8TBZ0 833 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 C15orf40Q8WUR7 153 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CREB3L1Q96BA8 519 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 COL21A1Q96P44 957 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 OR8B4Q96RC9 309 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CAMK2N2Q96S95 79 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 SORT1Q99523 831 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ZSCAN5AQ9BUG6 496 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 SLC25A2Q9BXI2 301 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 PARP12Q9H0J9 701 aaKnown RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 LHX5Q9H2C1 402 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 RWDD1Q9H446 243 aaPredicted RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 FBXO6Q9NRD1 293 aaPredicted RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 FARSBQ9NSD9 589 aaKnown RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 SMOXQ9NWM0 555 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 RNF14Q9UBS8 474 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CHRNA9Q9UGM1 479 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 SHPKQ9UHJ6 478 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ODF2LQ9ULJ1 636 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 MRPS18BQ9Y676 258 aaKnown RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 NOTCH1P46531 2555 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 CACNA1BQ00975 2339 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ITPR3Q14573 2671 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 TSPOAP1O95153 1857 aa0.56□□□□□ -2.32
UBXN4-207ENST00000471246 FASNP49327 2511 aaKnown RBP0.56□□□□□ -2.32
UBXN4-207ENST00000471246 ADAMTS13Q76LX8 1427 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 ABCA12Q86UK0 2595 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 BPTFQ12830 3046 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 FLNCQ14315 2725 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 SCN4AP35499 1836 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 PRRC2BQ5JSZ5 2229 aaKnown RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 TRAV39A0A0B4J263 110 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 A0A0U1RQV1 116 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 A0A1B0GW55 424 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 MBLAC1A4D2B0 266 aaPredicted RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 METTL21EPA6NDL7 271 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DNASE2O00115 360 aaPredicted RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 BPY2O14599 106 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 RHOBTB1O94844 696 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 UTS2O95399 124 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 UGT2B4P06133 528 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 GNAO1P09471 354 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 CT62P0C5K7 136 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 UBTFL6P0CB48 400 aaPredicted RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DUX4L2P0CJ85 424 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DUX4L3P0CJ86 424 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DUX4L5P0CJ88 424 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DUX4L6P0CJ89 424 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DUX4L7P0CJ90 424 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 ATP6V1C1P21283 382 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 MAS1LP35410 378 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 CHI3L1P36222 383 aaPredicted RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 TGFBR1P36897 503 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 SERPINB5P36952 375 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 FDFT1P37268 417 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 MDH1P40925 334 aaKnown RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 CDKN2BP42772 138 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 YAP1P46937 504 aaKnown RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 CXCL12P48061 93 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 RFX3P48380 749 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 RORCP51449 518 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DUSP3P51452 185 aaPredicted RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 ZNF138P52744 262 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 IRX3P78415 501 aaPredicted RBP0.55□□□□□ -2.32
UBXN4-207ENST00000471246 CBX1P83916 185 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 OGDHQ02218 1023 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 ZNF92Q03936 586 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 IFT88Q13099 833 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 PON2Q15165 354 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 INAQ16352 499 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 DGUOKQ16854 277 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 SLC36A3Q495N2 470 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 KCTD21Q4G0X4 260 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 FILIP1LQ4L180 1135 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 SFT2D3Q587I9 215 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 RIPPLY2Q5TAB7 128 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 ZFP1Q6P2D0 407 aa0.55□□□□□ -2.32
UBXN4-207ENST00000471246 TMEM205Q6UW68 189 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms