RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 OR8G3PP0DMU2 310 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 CBR1P16152 277 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 GSTM3P21266 225 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 ARHGDIAP52565 204 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 FMODQ06828 376 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 KRR1Q13601 381 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 MESTQ5EB52 335 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 RPL13AP3Q6NVV1 102 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 SLC25A47Q6Q0C1 308 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 RASSF6Q6ZTQ3 369 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 YTHDF3Q7Z739 585 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 SKA3Q8IX90 412 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 FAM169BQ8N8A8 192 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 NSMAFQ92636 917 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 RADILQ96JH8 1075 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 IFT27Q9BW83 186 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 EGLN3Q9H6Z9 239 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 UBTD1Q9HAC8 227 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 NTN4Q9HB63 628 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 IL20Q9NYY1 176 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 PDP1Q9P0J1 537 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 CRNNQ9UBG3 495 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 CDH10Q9Y6N8 788 aa12.66□□□□□ -0.38
SQSTM1-205ENST00000464493 SLC22A23A1A5C7 686 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ZNF503-AS2A6NEH8 195 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 H7C1C5 153 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ARPC3O15145 178 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 IDH3BO43837 385 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 FARS2O95363 451 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 IGKV3-15P01624 115 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 HLA-HP01893 362 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 CD79AP11912 226 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 FASP25445 335 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 NOS3P29474 1203 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ARR3P36575 388 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ACTR3P61158 418 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 LCN6P62502 163 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 PIGFQ07326 219 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 COX10Q12887 443 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 C3orf36Q3SXR2 165 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 NRN1LQ496H8 165 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 CLEC12AQ5QGZ9 265 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ADAM5Q6NVV9 412 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 CD300LDQ6UXZ3 194 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ADCK1Q86TW2 530 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 CDH24Q86UP0 819 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 MDP1Q86V88 176 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 DEPDC4Q8N2C3 294 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 PIAS4Q8N2W9 510 aaPredicted RBP12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 OR52L1Q8NGH7 329 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 NANOS1Q8WY41 292 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 AKAP1Q92667 903 aaKnown RBP eCLIP12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 NRBF2Q96F24 287 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 SLC38A2Q96QD8 506 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 NIPSNAP1Q9BPW8 284 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 B3GNT2Q9NY97 397 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 ZNF224Q9NZL3 707 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 UGT2A1Q9Y4X1 527 aa12.65□□□□□ -0.38
SQSTM1-205ENST00000464493 IGHV1-18A0A0C4DH31 117 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 MGRN1O60291 552 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 UBL3O95164 117 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 IGLV1-44P01699 117 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 NPR2P20594 1047 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 PRKACGP22612 351 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 CDAP32320 146 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 CDKN2AP42771 156 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 GUCA1AP43080 201 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 RAB1AP62820 205 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 MRPS34P82930 218 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 KPNB1Q14974 876 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 ATP6AP1Q15904 470 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SGCAQ16586 387 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 GSG1Q2KHT4 349 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SHQ1Q6PI26 577 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SLC22A25Q6T423 547 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 PTCHD4Q6ZW05 846 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 HS3ST5Q8IZT8 346 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 KBTBD8Q8NFY9 601 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 LILRB1Q8NHL6 650 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 HTRA1Q92743 480 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 RAB3IPQ96QF0 476 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SH3GL3Q99963 347 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 BDH2Q9BUT1 245 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 PLA2G12AQ9BZM1 189 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 DENND2DQ9H6A0 471 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SEC61A2Q9H9S3 476 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 ZNF556Q9HAH1 456 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SIAEQ9HAT2 523 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 VSX1Q9NZR4 365 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 ST6GALNAC2Q9UJ37 374 aa12.64□□□□□ -0.39
SQSTM1-205ENST00000464493 SHISA9B4DS77 424 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 BHLHE40O14503 412 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 HS3ST1O14792 307 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 IGFBP1P08833 259 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 CECR9P0C854 216 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 PATE4P0C8F1 98 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 FCGR1AP12314 374 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 ANXA8P13928 327 aa12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 HIST1H1CP16403 213 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-205ENST00000464493 PTDSS1P48651 473 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms