RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DNAJA3Q96EY1 480 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 AUNIPQ9H7T9 357 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 SUSD2Q9UGT4 822 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 SIT1Q9Y3P8 196 aa13.57□□□□□ -0.24
LDLR-202ENST00000455727 ASCC3Q8N3C0 2202 aaKnown RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 NAP1L6A6NFF2 107 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 A6NIZ1 184 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 VSTM2BA6NLU5 285 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 DCNP07585 359 aaKnown RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 CTLA4P16410 223 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 STOMP27105 288 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 MAP2K6P52564 334 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 CLDN12P56749 244 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 FBXW4P57775 412 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 RAP1BP61224 184 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 RAP1AP62834 184 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 RNASE12Q5GAN4 147 aaKnown RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 WDR38Q5JTN6 314 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 OR56B4Q8NH76 319 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 FCAMRQ8WWV6 532 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 NXPE2Q96DL1 559 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 RARRES3Q9UL19 164 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 ADAMTS9Q9P2N4 1935 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 TRAV8-7A0A075B6U6 113 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 CCDC163A0A0D9SF12 145 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 LY6G6EA0A0G2JKS1 128 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 ANXA2P2A6NMY6 339 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 ETV2O00321 342 aaPredicted RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 ZNF208O43345 1280 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 ZNF354AO60765 605 aaPredicted RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 SCRG1O75711 98 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 KRT33AO76009 404 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 TIAF1O95411 115 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 ANXA2P07355 339 aaKnown RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 H2AFB2P0C5Z0 115 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 PI4KAP42356 2102 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 FOXL2P58012 376 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 GLO1Q04760 184 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 PUDPQ08623 228 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 Q5BKY6 102 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 C1QTNF12Q5T7M4 302 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 LYSMD4Q5XG99 296 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 GUSBP11Q6P575 273 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 MAMSTRQ6ZN01 415 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 LRRC69Q6ZNQ3 347 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 C16orf47Q6ZP98 133 aaPredicted RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 OR5L2Q8NGL0 311 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 HYLS1Q96M11 299 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 IER2Q9BTL4 223 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 ING1Q9UK53 422 aaPredicted RBP13.56□□□□□ -0.24
LDLR-202ENST00000455727 U3KQA8 63 aa13.56□□□□□ -0.24
LDLR-202ENST00000455727 A0A1W2PQM1 296 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 CPED1A4D0V7 1026 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 TMEM200CA6NKL6 621 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 TTLL8A6PVC2 850 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 MS4A18H0YCH9 400 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 CSRP1P21291 193 aaKnown RBP13.55□□□□□ -0.24
LDLR-202ENST00000455727 HOXA6P31267 233 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 EMP2P54851 167 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 FCN2Q15485 313 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 GSG1Q2KHT4 349 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 MS4A18Q3C1V0 323 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 TMEM69Q5SWH9 247 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 PAPD4Q6PIY7 484 aaKnown RBP13.55□□□□□ -0.24
LDLR-202ENST00000455727 DNM1P46Q6ZS02 220 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 TMPRSS12Q86WS5 348 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 ZNF227Q86WZ6 799 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 OR51A4Q8NGJ6 313 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 OR10AC1Q8NH08 325 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 OR52I2Q8NH67 350 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 WDR77Q9BQA1 342 aaPredicted RBP13.55□□□□□ -0.24
LDLR-202ENST00000455727 OR51J1Q9H342 316 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 EMC7Q9NPA0 242 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 STMN3Q9NZ72 180 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 EMC3Q9P0I2 261 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 STEAP1Q9UHE8 339 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 IGHV5-10-1A0A0J9YXX1 117 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 MT-ND4P03905 459 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 SPARCP09486 303 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 CCR6P51684 374 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 ADAM8P78325 824 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 CCL7P80098 99 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 STPG1Q5TH74 334 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 ZNF385CQ66K41 422 aaPredicted RBP13.55□□□□□ -0.24
LDLR-202ENST00000455727 H1FNTQ75WM6 255 aaPredicted RBP13.55□□□□□ -0.24
LDLR-202ENST00000455727 SERPINA12Q8IW75 414 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 BMPERQ8N8U9 685 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 GRPEL2Q8TAA5 225 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 SAP25Q8TEE9 199 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 SLX1AQ9BQ83 275 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 HRASLSQ9HDD0 168 aa13.55□□□□□ -0.24
LDLR-202ENST00000455727 CACNA1CQ13936 2221 aa13.54□□□□□ -0.24
LDLR-202ENST00000455727 TNRC6BQ9UPQ9 1833 aaKnown RBP13.54□□□□□ -0.24
LDLR-202ENST00000455727 TNRC18O15417 2968 aaPredicted RBP13.54□□□□□ -0.24
LDLR-202ENST00000455727 A0A0C4DFX4 3053 aa13.54□□□□□ -0.24
LDLR-202ENST00000455727 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.54□□□□□ -0.24
LDLR-202ENST00000455727 ACOT7O00154 380 aa13.54□□□□□ -0.24
LDLR-202ENST00000455727 SOX1O00570 391 aaPredicted RBP13.54□□□□□ -0.24
LDLR-202ENST00000455727 FREM3P0C091 2139 aa13.54□□□□□ -0.24
LDLR-202ENST00000455727 CDK2P24941 298 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms