RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 SNX18Q96RF0 628 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 LIME1Q9H400 295 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 VSX1Q9NZR4 365 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-203ENST00000450867 GRHPRQ9UBQ7 328 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 CDH10Q9Y6N8 788 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 ITPR3Q14573 2671 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 IGKV1D-43A0A0B4J1Z2 117 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 IGHV1-18A0A0C4DH31 117 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 SLC22A23A1A5C7 686 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 PRSS37A4D1T9 235 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ABCD4O14678 606 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 HS3ST1O14792 307 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 IDH3BO43837 385 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 SEC14L2O76054 403 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ATE1O95260 518 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 SLC2A10O95528 541 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 TP53P04637 393 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-203ENST00000450867 OR8G3PP0DMU2 310 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 GSTM3P21266 225 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 SLC6A6P31641 620 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ARR3P36575 388 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF84P51523 738 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 RPS6KA3P51812 740 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 MYBPC1Q00872 1141 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 FMODQ06828 376 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 CD47Q08722 323 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 PPP1R8Q12972 351 aaKnown RBP12.51□□□□□ -0.41
COL3A1-203ENST00000450867 KRR1Q13601 381 aaKnown RBP12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF672Q499Z4 452 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-203ENST00000450867 C1orf146Q5VVC0 180 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ALKBH2Q6NS38 261 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 DPPA2Q7Z7J5 298 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 TMEM179BQ7Z7N9 219 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 SLC22A24Q8N4F4 322 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF611Q8N823 705 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 AQP11Q8NBQ7 271 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 GIPC3Q8TF64 312 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 NABP1Q96AH0 204 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 SLC38A2Q96QD8 506 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 RBP7Q96R05 134 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 U3KQV3 271 aa12.51□□□□□ -0.41
COL3A1-203ENST00000450867 ARFGEF3Q5TH69 2177 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 TEX13CA0A0J9YWL9 993 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 M0R1B8 84 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 XKRYO14609 159 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 TMCC2O75069 709 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 DEAF1O75398 565 aaPredicted RBP12.5□□□□□ -0.41
COL3A1-203ENST00000450867 CIB2O75838 187 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 RAF1P04049 648 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 CD53P19397 219 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 NPR2P20594 1047 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 IST1P53990 364 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 TUBA1BP68363 451 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 TUBA4AP68366 448 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 COX10Q12887 443 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 TUBA1AQ71U36 451 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 SKA3Q8IX90 412 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 OR10G2Q8NGC3 310 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 NANOS1Q8WY41 292 aaKnown RBP12.5□□□□□ -0.41
COL3A1-203ENST00000450867 RASD2Q96D21 266 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 NRBF2Q96F24 287 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 SAMD8Q96LT4 415 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 SIAEQ9HAT2 523 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 NTN4Q9HB63 628 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 NOX3Q9HBY0 568 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 IL20RAQ9UHF4 553 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 FBXL3Q9UKT7 428 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 IER3IP1Q9Y5U9 82 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 CELSR1Q9NYQ6 3014 aa12.5□□□□□ -0.41
COL3A1-203ENST00000450867 BHLHE40O14503 412 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 ARHGEF9O43307 516 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 UBL3O95164 117 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 FARS2O95363 451 aaKnown RBP12.49□□□□□ -0.41
COL3A1-203ENST00000450867 PPP1R3DO95685 299 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 HLA-HP01893 362 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 CECR9P0C854 216 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF14P17017 642 aaPredicted RBP12.49□□□□□ -0.41
COL3A1-203ENST00000450867 ACTR3P61158 418 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 ATP6AP1Q15904 470 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 GSG1Q2KHT4 349 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 FAM27BQ5VT28 67 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 SHQ1Q6PI26 577 aaKnown RBP12.49□□□□□ -0.41
COL3A1-203ENST00000450867 PTCHD4Q6ZW05 846 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 MDP1Q86V88 176 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 KBTBD8Q8NFY9 601 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 OR8D4Q8NGM9 314 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 AKAP1Q92667 903 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL3A1-203ENST00000450867 FEVQ99581 238 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 C1QTNF6Q9BXI9 259 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 PLA2G12AQ9BZM1 189 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 USF3Q68DE3 2245 aa12.49□□□□□ -0.41
COL3A1-203ENST00000450867 GNGT2O14610 69 aa12.48□□□□□ -0.41
COL3A1-203ENST00000450867 TIPRLO75663 272 aa12.48□□□□□ -0.41
COL3A1-203ENST00000450867 MMP7P09237 267 aaPredicted RBP12.48□□□□□ -0.41
COL3A1-203ENST00000450867 DANCRP0C864 163 aa12.48□□□□□ -0.41
COL3A1-203ENST00000450867 DNASE1P24855 282 aa12.48□□□□□ -0.41
COL3A1-203ENST00000450867 CDKN2AP42771 156 aaKnown RBP12.48□□□□□ -0.41
COL3A1-203ENST00000450867 ERFP50548 548 aa12.48□□□□□ -0.41
COL3A1-203ENST00000450867 NAAAQ02083 359 aa12.48□□□□□ -0.41
COL3A1-203ENST00000450867 SPOCK1Q08629 439 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms