RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 FKBP1CQ5VVH2 108 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 OR4C11Q6IEV9 310 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 OR4S1Q8NGB4 309 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 BRI3BPQ8WY22 251 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SLC46A1Q96NT5 459 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 RANBP9Q96S59 729 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 EPHX3Q9H6B9 360 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SIRT3Q9NTG7 399 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 NOCTQ9UK39 431 aaKnown RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SYNGR2O43760 224 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ABOP16442 354 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 POU3F2P20265 443 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 EPHA2P29317 976 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 OTX2P32243 289 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 FOXN2P32314 431 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ZNF528Q3MIS6 628 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 DEFB134Q4QY38 66 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 DPPA4Q7L190 304 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 IRF7Q92985 503 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 TAS2R5Q9NYW4 299 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 PPP1R3CQ9UQK1 317 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 MMP24Q9Y5R2 645 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 C2CD4BA6NLJ0 364 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CCSO14618 274 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SLC25A5P05141 298 aaKnown RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 FBXO45P0C2W1 286 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 HAPLN1P10915 354 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SELEP16581 610 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 TNFSF8P32971 234 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 LTC4SQ16873 150 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SUSD1Q6UWL2 747 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SAMD7Q7Z3H4 446 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CMTM4Q8IZR5 234 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 EXD3Q8N9H8 876 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 VN1R3Q9BXE9 311 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 EMC9Q9Y3B6 208 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CRB1P82279 1406 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 B4E171 279 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SCAMP2O15127 329 aaKnown RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 RHBDL1O75783 438 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CSF3P09919 207 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 FABP4P15090 132 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 DIO3P55073 304 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 DRAM2Q6UX65 266 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CLDN22Q8N7P3 220 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 MYOZ3Q8TDC0 251 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 TTC9Q92623 222 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ULBP2Q9BZM5 246 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CSNK1G1Q9HCP0 422 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ANXA10Q9UJ72 324 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 MOKQ9UQ07 419 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SPTAN1Q13813 2472 aaKnown RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ZNF785A8K8V0 405 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SELPP16109 830 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 GABRB3P28472 473 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SUCLG1P53597 346 aaKnown RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 WBP2NLQ6ICG8 309 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 VSIG10LQ86VR7 867 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 TCTN2Q96GX1 697 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 LCORQ96JN0 433 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ZPBPQ9BS86 351 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 CRISPLD2Q9H0B8 497 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 SLC25A18Q9H1K4 315 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 DLG5Q8TDM6 1919 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 COL6A6A6NMZ7 2263 aa8.3□□□□□ -1.08
NIPBL-202ENST00000448238 ALX3O95076 343 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 OR2T7P0C7T2 308 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 FUT1P19526 365 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 HTR1FP30939 366 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 SELENOWP63302 87 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 EXOSC2Q13868 293 aaKnown RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 VRK2Q86Y07 508 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 NLGN4XQ8N0W4 816 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 TMEM251Q8N6I4 163 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 SLC7A6Q92536 515 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 ZNF689Q96CS4 500 aaPredicted RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 SFRP2Q96HF1 295 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 HRASLS5Q96KN8 279 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 ZNF583Q96ND8 569 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 JAM3Q9BX67 310 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 KCNMB3Q9NPA1 279 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 SNX11Q9Y5W9 270 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 LOC100289279A0A1B0GTE1 492 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 SLC38A8A6NNN8 435 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 H3BML4 177 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 PSMB10P40306 273 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 CEBPDP49716 269 aaPredicted RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 NAT8LQ8N9F0 302 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 H1FXQ92522 213 aaKnown RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 NRIP3Q9NQ35 241 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 GDF2Q9UK05 429 aaPredicted RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 EFCAB6Q5THR3 1501 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 NME2P1O60361 137 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 MRPL33O75394 65 aaKnown RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 CD1EP15812 388 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 C21orf62-AS1Q17RA5 79 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 NADSYN1Q6IA69 706 aa8.29□□□□□ -1.08
NIPBL-202ENST00000448238 MEPCEQ7L2J0 689 aaKnown RBP8.29□□□□□ -1.08
NIPBL-202ENST00000448238 ARL14EPQ8N8R7 260 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms