RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LRFN3Q9BTN0 628 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TGIF2Q9GZN2 237 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 C4AP0C0L4 1744 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 C4BP0C0L5 1744 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 HSD17B6O14756 317 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 EIF4E2O60573 245 aaKnown RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 ABLIM3O94929 683 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 PMP2P02689 132 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 USF1P22415 310 aaPredicted RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 NKX2-1P43699 371 aaPredicted RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 OR8G1Q15617 311 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 SLC36A2Q495M3 483 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 DOK3Q7L591 496 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 CCDC116Q8IYX3 515 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 RAB40CQ96S21 281 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 NKX2-4Q9H2Z4 354 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 VDAC3Q9Y277 283 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 TMEM269A0A1B0GVZ9 245 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 LINC01387J3KSC0 135 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 GLCEO94923 617 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 P04436 131 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 SGCAQ16586 387 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 AANATQ16613 207 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 FIBINQ8TAL6 211 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 SFT2D1Q8WV19 159 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 ENKD1Q9H0I2 346 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 KDM4EB2RXH2 506 aaPredicted RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 TXNDC12O95881 172 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 SERPINA2P20848 420 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 PTGER4P35408 488 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 HSF5Q4G112 596 aaPredicted RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 COL5A1-AS1Q5SY13 56 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 DEGS2Q6QHC5 323 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 SPATC1Q76KD6 591 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 VRK2Q86Y07 508 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 PXYLP1Q8TE99 480 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 IP6K3Q96PC2 410 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 NPAS1Q99742 590 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 ANGPTL4Q9BY76 406 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 KCNK12Q9HB15 430 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 FAM198AQ9UFP1 575 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 CHEK1O14757 476 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 PQBP1O60828 265 aaKnown RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 BTNL3Q6UXE8 466 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 LYG2Q86SG7 212 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 KRTCAP2Q8N6L1 136 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 GJC3Q8NFK1 279 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 OR4A16Q8NH70 328 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 USB1Q9BQ65 265 aaKnown RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 GSX1Q9H4S2 264 aaPredicted RBP6.65□□□□□ -1.35
VPS53-204ENST00000437048 PRSS16Q9NQE7 514 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 KCNK6Q9Y257 313 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 SLCO1B1Q9Y6L6 691 aa6.65□□□□□ -1.35
VPS53-204ENST00000437048 CTDSP2O14595 271 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 GPR75O95800 540 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 POU3F4P49335 361 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 CXCL17Q6UXB2 119 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PRR22Q8IZ63 422 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR51S1Q8NGJ8 323 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 RAB8BQ92930 207 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ADIPOR1Q96A54 375 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 GAB2Q9UQC2 676 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 LRRC30A6NM36 301 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 IL33O95760 270 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR5AC1P0C628 307 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 BARHL1Q9BZE3 327 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 CYSLTR2Q9NS75 346 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR5H15A6NDH6 313 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR5H1A6NKK0 313 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 HIST1H1BP16401 226 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 GPR12P47775 334 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 NKPD1Q17RQ9 610 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FFAR4Q5NUL3 377 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR2W3Q7Z3T1 314 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PIM3Q86V86 326 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 C2orf50Q96LR7 162 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 F2RL3Q96RI0 385 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 TMEM70Q9BUB7 260 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 INSL6Q9Y581 213 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 GCH1P30793 250 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 HSF1Q00613 529 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 EXOSC2Q13868 293 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 NLGN4YQ8NFZ3 816 aaPredicted RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR11L1Q8NGX0 322 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ATOH8Q96SQ7 321 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FCF1Q9Y324 198 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 LRP6O75581 1613 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PEAK1Q9H792 1746 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ZNF724A8MTY0 619 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 C8AP07357 584 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 MRPL3P09001 348 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 CTRB1P17538 263 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SLC22A6Q4U2R8 563 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 NBPF12Q5TAG4 269 aaPredicted RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 CTRB2Q6GPI1 263 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 RPUSD3Q6P087 351 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 PLXDC2Q6UX71 529 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 KREMEN2Q8NCW0 462 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ACY3Q96HD9 319 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ZFYVE21Q9BQ24 234 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms