RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ANKRD16Q6P6B7 361 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 PQLC1Q8N2U9 271 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 C17orf78Q8N4C9 275 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 NPEPL1Q8NDH3 523 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 HSD17B8Q92506 261 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 ZNF570Q96NI8 536 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 ERMAPQ96PL5 475 aaPredicted RBP10.87□□□□□ -0.67
USP40-205ENST00000430158 SNX18Q96RF0 628 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 IFT27Q9BW83 186 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 TSSK6Q9BXA6 273 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 OSBPL10Q9BXB5 764 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 ULBP2Q9BZM5 246 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 ZNF224Q9NZL3 707 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 GRHPRQ9UBQ7 328 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 LRBAP50851 2863 aa10.87□□□□□ -0.67
USP40-205ENST00000430158 ARPC4-TTLL3A0A0A6YYG9 625 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 H7C1C5 153 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 SOCS2O14508 198 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ARHGEF9O43307 516 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 KRT33AO76009 404 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 SLC2A10O95528 541 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 PRF1P14222 555 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 CTLA4P16410 223 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ZNF23P17027 643 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 EPHA2P29317 976 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 GIPRP48546 466 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 RPS6KA3P51812 740 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 CLRN1P58418 232 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 LCN6P62502 163 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ELF3P78545 371 aaPredicted RBP10.86□□□□□ -0.67
USP40-205ENST00000430158 CDK5Q00535 292 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 TGFBR3Q03167 851 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 DBPQ10586 325 aaPredicted RBP10.86□□□□□ -0.67
USP40-205ENST00000430158 ETFDHQ16134 617 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 CLEC12AQ5QGZ9 265 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 THEM4Q5T1C6 240 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ACSM5Q6NUN0 579 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ADCK1Q86TW2 530 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ZDHHC13Q8IUH4 622 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 DNAJC9Q8WXX5 260 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 NABP1Q96AH0 204 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 C14orf79Q96F83 325 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 ZNF75AQ96N20 296 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 NDEL1Q9GZM8 345 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 SLC24A3Q9HC58 644 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 B3GAT2Q9NPZ5 323 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 TMEM38BQ9NVV0 291 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 B3GNT2Q9NY97 397 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 NPAP1Q9NZP6 1156 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 NDRG3Q9UGV2 375 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 CCDC168Q8NDH2 2452 aa10.86□□□□□ -0.67
USP40-205ENST00000430158 RAI1Q7Z5J4 1906 aaPredicted RBP10.86□□□□□ -0.67
USP40-205ENST00000430158 IGLV1-36A0A0B4J1U3 117 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 A0A1W2PPR1 153 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 CIB4A0PJX0 185 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 OR6C68A6NDL8 312 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SAC3D1A6NKF1 404 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 DCTN6O00399 190 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SEC14L2O76054 403 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 HRGP04196 525 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 ALPLP05186 524 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SCG5P05408 212 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 CDH2P19022 906 aaPredicted RBP10.85□□□□□ -0.67
USP40-205ENST00000430158 ARHGDIAP52565 204 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 MRPS34P82930 218 aaKnown RBP10.85□□□□□ -0.67
USP40-205ENST00000430158 PGGHGQ32M88 737 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 NRN1LQ496H8 165 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SLC35F1Q5T1Q4 408 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 IQCF1Q8N6M8 205 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 ATG16L2Q8NAA4 619 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 OR4K13Q8NH42 304 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 FGFBP3Q8TAT2 258 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 FNDC8Q8TC99 324 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 HTRA1Q92743 480 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 RBP7Q96R05 134 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 NMNAT3Q96T66 252 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SLC29A1Q99808 456 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 FOXB1Q99853 325 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 MED18Q9BUE0 208 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 NMNAT2Q9BZQ4 307 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SYT4Q9H2B2 425 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 NOX3Q9HBY0 568 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 SLC25A19Q9HC21 320 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 OBP2BQ9NPH6 170 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 PAPOLBQ9NRJ5 636 aaKnown RBP10.85□□□□□ -0.67
USP40-205ENST00000430158 USE1Q9NZ43 259 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 CRNNQ9UBG3 495 aaPredicted RBP10.85□□□□□ -0.67
USP40-205ENST00000430158 BAIAP2Q9UQB8 552 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 POFUT2Q9Y2G5 429 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 PDZD2O15018 2839 aa10.85□□□□□ -0.67
USP40-205ENST00000430158 ARID1AO14497 2285 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 ANKRD17O75179 2603 aaKnown RBP10.84□□□□□ -0.67
USP40-205ENST00000430158 A0A096LPE4 126 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 A0A1W2PPZ6 126 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 A0A1W2PR80 420 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 DPRXA6NFQ7 191 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 A6NNC1 897 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 CTAG2O75638 210 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 B4GALT1P15291 398 aa10.84□□□□□ -0.67
USP40-205ENST00000430158 CDAP32320 146 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms