RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 GABPB1Q06547 395 aaPredicted RBP10.89□□□□□ -0.67
SKA1-203ENST00000417656 ATP6AP1Q15904 470 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 SLC25A47Q6Q0C1 308 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 KLHL17Q6TDP4 642 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 RASSF6Q6ZTQ3 369 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 PTCHD4Q6ZW05 846 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 ZNF627Q7L945 461 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 YTHDF3Q7Z739 585 aaKnown RBP10.89□□□□□ -0.67
SKA1-203ENST00000417656 MDP1Q86V88 176 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 OR52L1Q8NGH7 329 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 PYDC1Q8WXC3 89 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 RAB3IPQ96QF0 476 aaPredicted RBP10.89□□□□□ -0.67
SKA1-203ENST00000417656 FEVQ99581 238 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 TMEM204Q9BSN7 226 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 LIME1Q9H400 295 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 PLEKHF2Q9H8W4 249 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 SEC61A2Q9H9S3 476 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 UBTD1Q9HAC8 227 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 SMURF2Q9HAU4 748 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 TBC1D23Q9NUY8 699 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 ARMC1Q9NVT9 282 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 ZNF224Q9NZL3 707 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 UGT2A1Q9Y4X1 527 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 AP4S1Q9Y587 144 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 ABCA4P78363 2273 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 A0A1W2PPL8 197 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 SLC22A23A1A5C7 686 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 PRSS37A4D1T9 235 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 ABCD4O14678 606 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 TXNDC12O95881 172 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 TP53P04637 393 aaPredicted RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 CELA3BP08861 270 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 CD79AP11912 226 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 APEHP13798 732 aaKnown RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 PRKACGP22612 351 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 CD40P25942 277 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 CDAP32320 146 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 IDH3GP51553 393 aaPredicted RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 NPRL3Q12980 569 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 RPL13AP3Q6NVV1 102 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 SHQ1Q6PI26 577 aaKnown RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 TMEM108Q6UXF1 575 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 ADCK1Q86TW2 530 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 CDH24Q86UP0 819 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 MYPOPQ86VE0 399 aaPredicted RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 SKA3Q8IX90 412 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 SLC22A24Q8N4F4 322 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 FNDC8Q8TC99 324 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 NANOS1Q8WY41 292 aaKnown RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 NEUROG1Q92886 237 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 RBP7Q96R05 134 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 SH3GL3Q99963 347 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 SYT4Q9H2B2 425 aa10.88□□□□□ -0.67
SKA1-203ENST00000417656 DENND2DQ9H6A0 471 aaPredicted RBP10.88□□□□□ -0.67
SKA1-203ENST00000417656 IGHV1-18A0A0C4DH31 117 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 BHLHE40O14503 412 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 ARPC3O15145 178 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 CECR9P0C854 216 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 PATE4P0C8F1 98 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 OR8G3PP0DMU2 310 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 FCGR1AP12314 374 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 HIST1H1CP16403 213 aaKnown RBP10.87□□□□□ -0.67
SKA1-203ENST00000417656 CTLA4P16410 223 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 PTAFRP25105 342 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 FASP25445 335 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 CDKN2AP42771 156 aaKnown RBP10.87□□□□□ -0.67
SKA1-203ENST00000417656 MRPS34P82930 218 aaKnown RBP10.87□□□□□ -0.67
SKA1-203ENST00000417656 PIGFQ07326 219 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 GSG1Q2KHT4 349 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 SLC36A3Q495N2 470 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 THEM4Q5T1C6 240 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 SLC35F1Q5T1Q4 408 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 C1QTNF12Q5T7M4 302 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 LEG1Q6P5S2 330 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 PAMR1Q6UXH9 720 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 AMIGO2Q86SJ2 522 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 JAZF1Q86VZ6 243 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 SDR9C7Q8NEX9 313 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 OR4Q3Q8NH05 313 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 OR4K13Q8NH42 304 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 FGFBP3Q8TAT2 258 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 LRTOMTQ8WZ04 291 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 NABP1Q96AH0 204 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 FOXN4Q96NZ1 517 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 SLC38A2Q96QD8 506 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 TSSK6Q9BXA6 273 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 FN3KQ9H479 309 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 IL20Q9NYY1 176 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 VSX1Q9NZR4 365 aaPredicted RBP10.87□□□□□ -0.67
SKA1-203ENST00000417656 KIF17Q9P2E2 1029 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 CRNNQ9UBG3 495 aaPredicted RBP10.87□□□□□ -0.67
SKA1-203ENST00000417656 POLQO75417 2590 aa10.87□□□□□ -0.67
SKA1-203ENST00000417656 ANKRD17O75179 2603 aaKnown RBP10.86□□□□□ -0.67
SKA1-203ENST00000417656 SHISA9B4DS77 424 aa10.86□□□□□ -0.67
SKA1-203ENST00000417656 ATP6V1G2-DDX39BF2Z307 99 aa10.86□□□□□ -0.67
SKA1-203ENST00000417656 H3BNX3 289 aa10.86□□□□□ -0.67
SKA1-203ENST00000417656 UBL3O95164 117 aa10.86□□□□□ -0.67
SKA1-203ENST00000417656 FARS2O95363 451 aaKnown RBP10.86□□□□□ -0.67
SKA1-203ENST00000417656 IGKV3-15P01624 115 aa10.86□□□□□ -0.67
SKA1-203ENST00000417656 IGLV1-44P01699 117 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms