RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SLC35A2P78381 396 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 GLO1Q04760 184 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 FMODQ06828 376 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 RAB40BQ12829 278 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 POU4F2Q12837 409 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 KLHL12Q53G59 568 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 KLHL22Q53GT1 634 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 LCN1P1Q5VSP4 162 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 FOXL2NBQ6ZUU3 175 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 GLB1L2Q8IW92 636 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 ZNF100Q8IYN0 542 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 GPR137CQ8N3F9 429 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 RPRMLQ8N4K4 120 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 PROKR2Q8NFJ6 384 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 GGHQ92820 318 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 RNFT2Q96EX2 444 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 DMRTA2Q96SC8 542 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 AMBNQ9NP70 447 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 FGF20Q9NP95 211 aaPredicted RBP12.59□□□□□ -0.39
SF3B1-204ENST00000414963 PLSCR4Q9NRQ2 329 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 TINAGQ9UJW2 476 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 UGT2A1Q9Y4X1 527 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 KALRNO60229 2985 aa12.59□□□□□ -0.39
SF3B1-204ENST00000414963 J3QRE1 110 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 DHHO43323 396 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 MRPS14O60783 128 aaKnown RBP12.58□□□□□ -0.4
SF3B1-204ENST00000414963 IL18BPO95998 194 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 CGAP01215 116 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 HRGP04196 525 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 TMIGD3P0DMS9 266 aaPredicted RBP12.58□□□□□ -0.4
SF3B1-204ENST00000414963 EDNRAP25101 427 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 CTSSP25774 331 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 PER3P56645 1201 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 DBPQ10586 325 aaPredicted RBP12.58□□□□□ -0.4
SF3B1-204ENST00000414963 FOXF2Q12947 444 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 ETFDHQ16134 617 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 KCNMB1Q16558 191 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 TSPO2Q5TGU0 170 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 FBXW9Q5XUX1 488 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 TMEM211Q6ICI0 200 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 GCNT2Q8N0V5 402 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF540Q8NDQ6 660 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 OR51L1Q8NGJ5 315 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 STARD4Q96DR4 205 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 LGALS12Q96DT0 336 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 BBC3Q96PG8 261 aaPredicted RBP12.58□□□□□ -0.4
SF3B1-204ENST00000414963 SIGLEC11Q96RL6 698 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 SFXN3Q9BWM7 321 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 ULBP2Q9BZM5 246 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 GPR35Q9HC97 309 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 CCNB1IP1Q9NPC3 277 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 SLC7A10Q9NS82 523 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 MALT1Q9UDY8 824 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 COA3Q9Y2R0 106 aaPredicted RBP12.58□□□□□ -0.4
SF3B1-204ENST00000414963 SHANK1Q9Y566 2161 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 PCDHGB1Q9Y5G3 927 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 CFAP46Q8IYW2 2715 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 POLEQ07864 2286 aa12.58□□□□□ -0.4
SF3B1-204ENST00000414963 KMT2BQ9UMN6 2715 aaPredicted RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 HSPB2A8KAH6 182 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 PTGES3LE9PB15 166 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 SMNDC1O75940 238 aaKnown RBP eCLIP12.57□□□□□ -0.41e-11■■■■□ 23.3
SF3B1-204ENST00000414963 LYNP07948 512 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 SBK2P0C263 348 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 GAAP10253 952 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 CD8BP10966 210 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 LAP3P28838 519 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 RPS7P62081 194 aaKnown RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 HSF2Q03933 536 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 PMPCAQ10713 525 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 HSPB2Q16082 182 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 NRN1LQ496H8 165 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 TEX30Q5JUR7 227 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 RNLSQ5VYX0 342 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 TFAP2EQ6VUC0 442 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 B3GLCTQ6Y288 498 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 C3P1Q6ZMU1 363 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 ZNF627Q7L945 461 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 LINGO2Q7L985 606 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 ABHD12BQ7Z5M8 362 aaPredicted RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 BTLAQ7Z6A9 289 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 TIGD4Q8IY51 512 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 NAXEQ8NCW5 288 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 GALNT11Q8NCW6 608 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 SLC26A10Q8NG04 563 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 OR6K6Q8NGW6 343 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 MYDGFQ969H8 173 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 ZMYND19Q96E35 227 aaPredicted RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 JAM3Q9BX67 310 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 ADGRL4Q9HBW9 690 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 CRLF2Q9HC73 371 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 PAK1IP1Q9NWT1 392 aaPredicted RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 MEMO1Q9Y316 297 aa12.57□□□□□ -0.4
SF3B1-204ENST00000414963 RP1L1Q8IWN7 2480 aaPredicted RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 SPENQ96T58 3664 aaKnown RBP12.57□□□□□ -0.4
SF3B1-204ENST00000414963 ZFYVE26Q68DK2 2539 aa12.56□□□□□ -0.4
SF3B1-204ENST00000414963 MAGEA13PA6NCF6 341 aa12.56□□□□□ -0.4
SF3B1-204ENST00000414963 FAM171A2A8MVW0 826 aa12.56□□□□□ -0.4
SF3B1-204ENST00000414963 B8ZZF3 427 aa12.56□□□□□ -0.4
SF3B1-204ENST00000414963 FADS2O95864 444 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms