RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ZNF749O43361 778 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 PLRG1O43660 514 aaKnown RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 FOXD2O60548 495 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SDHBP21912 280 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 BTN1A1Q13410 526 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 COL9A3Q14050 684 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 FCN2Q15485 313 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OR7E24Q6IFN5 339 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 FAM180BQ6P0A1 224 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM71Q6P5X7 295 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF534Q76KX8 674 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 GDF7Q7Z4P5 450 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 MAML2Q8IZL2 1156 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LSMEM2Q8N112 164 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 FAM71CQ8NEG0 241 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 PIGCQ92535 297 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 TM4SF18Q96CE8 201 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 CSF3RQ99062 836 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 GNG12Q9UBI6 72 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF225Q9UK10 706 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 PTRH2Q9Y3E5 179 aaKnown RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LTN1O94822 1766 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 A0A0A6YYC8 382 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 TRBV4-1A0A0J9YWV2 114 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 I3L1I5 382 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SCAMP1O15126 338 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OR7C1O76099 320 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 DBHP09172 617 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 COX5AP20674 150 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 PSMB10P40306 273 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 RPL34P49207 117 aaKnown RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 DIO1P49895 249 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 MAP4K2Q12851 820 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SEMA3BQ13214 749 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 IKZF1Q13422 519 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ABHD17CQ6PCB6 329 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OR2W3Q7Z3T1 314 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 VRK2Q86Y07 508 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 PGBD5Q8N414 524 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OR4F15Q8NGB8 312 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 EDARADDQ8WWZ3 215 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 UBQLN3Q9H347 655 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 NOSIPQ9Y314 301 aaKnown RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 A0A1B0GTW7 788 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ACOD1A6NK06 481 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ZAR1LA6NP61 321 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SERPINE3A8MV23 424 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 H0YGG7 62 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 H0YIG0 161 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 CLDN1O95832 211 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 STATHP02808 62 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 CHRM4P08173 479 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ISL1P61371 349 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 MRPS34P82930 218 aaKnown RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 KIAA0141Q14154 515 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SYPL1Q16563 259 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 DCAF12Q5T6F0 453 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 AFMIDQ63HM1 303 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 C17orf99Q6UX52 265 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SLC35D2Q76EJ3 337 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 Q8IYB0 196 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 CARFQ8N187 725 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OR5T1Q8NG75 326 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LKAAEAR1Q8TD35 194 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ST7LQ8TDW4 575 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ELF4Q99607 663 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 USP36Q9P275 1121 aaKnown RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OR14J1Q9UGF5 321 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 VDAC3Q9Y277 283 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SERTM1A2A2V5 107 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 FAM183AA6NL82 134 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HCRTO43612 131 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 UTS2O95399 124 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 GLULP15104 373 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 PSMB6P28072 239 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 NKX2-5P52952 324 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SELENBP1Q13228 472 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 COL13A1Q5TAT6 717 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TMPRSS9Q7Z410 1059 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF573Q86YE8 665 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 FAM217AQ8IXS0 508 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ZDHHC22Q8N966 263 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR13C2Q8NGS9 318 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 C2orf50Q96LR7 162 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 C3orf30Q96M34 536 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ADOQ96SZ5 270 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 S1PR5Q9H228 398 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TMPRSS5Q9H3S3 457 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF107Q9UII5 783 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 PADI1Q9ULC6 663 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 PUS1Q9Y606 427 aaKnown RBP eCLIP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TRAF3IP2O43734 574 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 RPL13AP40429 203 aaKnown RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 RBP2P50120 134 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SLC9A3R2Q15599 337 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ABI3BPQ7Z7G0 1075 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ADIPOR2Q86V24 386 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 LAX1Q8IWV1 398 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM229BQ8NBD8 167 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms