RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 SEMA6AQ9H2E6 1030 aa10.4□□□□□ -0.74
SNCA-202ENST00000345009 KCNN2Q9H2S1 579 aa10.4□□□□□ -0.74
SNCA-202ENST00000345009 EGLN3Q9H6Z9 239 aa10.4□□□□□ -0.74
SNCA-202ENST00000345009 PAPOLBQ9NRJ5 636 aaKnown RBP10.4□□□□□ -0.74
SNCA-202ENST00000345009 ADAM18Q9Y3Q7 739 aa10.4□□□□□ -0.74
SNCA-202ENST00000345009 ORC6Q9Y5N6 252 aa10.4□□□□□ -0.74
SNCA-202ENST00000345009 NOTCH2Q04721 2471 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 TEX13CA0A0J9YWL9 993 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 SOCS2O14508 198 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 WIPF1O43516 503 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 PPP1R3DO95685 299 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 HMGN1P05114 100 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 OR8G3PP0DMU2 310 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 OSMP13725 252 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 ZNF26P17031 533 aaPredicted RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 POU1F1P28069 291 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 CRABP1P29762 137 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 CCKARP32238 428 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 NR1H2P55055 460 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 MYBPC1Q00872 1141 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 RUNX1T1Q06455 604 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 LGALS3BPQ08380 585 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 SNTB1Q13884 538 aaKnown RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 TSC22D1Q15714 1073 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 NRN1LQ496H8 165 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 CLEC12AQ5QGZ9 265 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 ALKBH2Q6NS38 261 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 FAHD1Q6P587 224 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 LRFN4Q6PJG9 635 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 ZNF813Q6ZN06 617 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 FAM122BQ7Z309 247 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 LNX2Q8N448 690 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 OR1K1Q8NGR3 316 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 NANOS1Q8WY41 292 aaKnown RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 HDAC2Q92769 488 aaKnown RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 BCL2L2Q92843 193 aaPredicted RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 SNX18Q96RF0 628 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 FOXB1Q99853 325 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 NIPSNAP1Q9BPW8 284 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 RBM4BQ9BQ04 359 aaKnown RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 RBM4Q9BWF3 364 aaKnown RBP10.39□□□□□ -0.75
SNCA-202ENST00000345009 SLC17A5Q9NRA2 495 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 KRT84Q9NSB2 600 aa10.39□□□□□ -0.75
SNCA-202ENST00000345009 SLC22A23A1A5C7 686 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 RIIAD1A6NNX1 92 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 H0YHG0 523 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 H3BNX3 289 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 SOX14O95416 240 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 CRYGSP22914 178 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 CAPZA2P47755 286 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 GIPRP48546 466 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 FXYD6P3P58550 94 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 ESRRGP62508 458 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 TAB1Q15750 504 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 TBRG1Q3YBR2 411 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 SLC36A3Q495N2 470 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 BEX5Q5H9J7 111 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 PHYHD1Q5SRE7 291 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 C10orf128Q5T292 105 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 SLC27A4Q6P1M0 643 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 ZNF771Q7L3S4 317 aaPredicted RBP10.38□□□□□ -0.75
SNCA-202ENST00000345009 ZNF627Q7L945 461 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 LINGO2Q7L985 606 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 WFDC8Q8IUA0 241 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 HS3ST5Q8IZT8 346 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 PQLC1Q8N2U9 271 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 PARP8Q8N3A8 854 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 OR52N5Q8NH56 324 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 RASD2Q96D21 266 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 C14orf79Q96F83 325 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 PKP2Q99959 881 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 C9orf16Q9BUW7 83 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 PRRG3Q9BZD7 231 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 GABARAPL1Q9H0R8 117 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 ESRP2Q9H6T0 727 aaKnown RBP10.38□□□□□ -0.75
SNCA-202ENST00000345009 KLHL21Q9UJP4 597 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 FBXL3Q9UKT7 428 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 OAZ3Q9UMX2 235 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 EDARQ9UNE0 448 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 UNC79Q9P2D8 2635 aa10.38□□□□□ -0.75
SNCA-202ENST00000345009 DCHS2Q6V1P9 2916 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 A0A096LPE4 126 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 A0A1W2PPZ6 126 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 A6NNC1 897 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 ANKRD65E5RJM6 399 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 KHDRBS3O75525 346 aaKnown RBP10.37□□□□□ -0.75
SNCA-202ENST00000345009 PAICSP22234 425 aaKnown RBP10.37□□□□□ -0.75
SNCA-202ENST00000345009 IGFBP5P24593 272 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 ZNF133P52736 654 aaPredicted RBP10.37□□□□□ -0.75
SNCA-202ENST00000345009 FOXG1P55316 489 aaPredicted RBP10.37□□□□□ -0.75
SNCA-202ENST00000345009 MRPS34P82930 218 aaKnown RBP10.37□□□□□ -0.75
SNCA-202ENST00000345009 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.37□□□□□ -0.75
SNCA-202ENST00000345009 SLC36A2Q495M3 483 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 HIKESHIQ53FT3 197 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 MESTQ5EB52 335 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 LEG1Q6P5S2 330 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 TMEM108Q6UXF1 575 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 DEPDC4Q8N2C3 294 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 SLC22A24Q8N4F4 322 aa10.37□□□□□ -0.75
SNCA-202ENST00000345009 OR52E2Q8NGJ4 325 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms