RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 GRINAQ7Z429 371 aa13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 C9orf62Q8N4C0 152 aa13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 ZNF519Q8TB69 540 aa13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 ZNF431Q8TF32 576 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 DCBLD2Q96PD2 775 aa13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 C7orf50Q9BRJ6 194 aaKnown RBP13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 PCED1AQ9H1Q7 454 aa13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 DUSP15Q9H1R2 295 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 ING4Q9UNL4 249 aa13.42□□□□□ -0.26
VIPAS39-202ENST00000343765 TIAF1O95411 115 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 PNPP00491 289 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 MT-ATP6P00846 226 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 CALCBP10092 127 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 MFGE8Q08431 387 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 KRT77Q7Z794 578 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 OR51D1Q8NGF3 324 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 OR56B4Q8NH76 319 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 HAVCR1Q96D42 359 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 CMTM3Q96MX0 182 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 OR8B4Q96RC9 309 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 SEMA4CQ9C0C4 833 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 ZFP64Q9NPA5 681 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 SLC23A1Q9UHI7 598 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 CENPBD1B2RD01 187 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 PLPP3O14495 311 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 NPIPB7O75200 414 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 LCN1P31025 176 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 RASGEF1BQ0VAM2 473 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 SLC17A1Q14916 467 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 CD276Q5ZPR3 534 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 LYPD8Q6UX82 237 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 LUZP2Q86TE4 346 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 ZNF227Q86WZ6 799 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 OR11G2Q8NGC1 345 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 OR11H4Q8NGC9 324 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 MIB2Q96AX9 1013 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 ARL5BQ96KC2 179 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 GAL3ST1Q99999 423 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 TXNIPQ9H3M7 391 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 FSCN3Q9NQT6 498 aa13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 COA3Q9Y2R0 106 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-202ENST00000343765 TRBV5-7A0A0A0MS05 114 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 SLC22A23A1A5C7 686 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 ARPC1BO15143 372 aaKnown RBP13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 EFNB2P52799 333 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 FMODQ06828 376 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 SQSTM1Q13501 440 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 EIF2B1Q14232 305 aaKnown RBP13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 SMAD2Q15796 467 aaKnown RBP13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 HYAL4Q2M3T9 481 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 SLC18B1Q6NT16 456 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 MAMSTRQ6ZN01 415 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 NUP54Q7Z3B4 507 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 EMC7Q9NPA0 242 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 MED11Q9P086 117 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 AKAP7Q9P0M2 348 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 FREM3P0C091 2139 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 IGLV1-36A0A0B4J1U3 117 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 MEIS3P1A6NDR6 274 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 ERVH48-1M5A8F1 160 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 GPR171O14626 319 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 PEX14O75381 377 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 DXOO77932 396 aaKnown RBP13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 TOXO94900 526 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 HEXBP07686 556 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 RAB40ALP0C0E4 278 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 OR7A5Q15622 319 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 SLC25A25Q6KCM7 469 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 ARSKQ6UWY0 536 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 PRSS42Q7Z5A4 293 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 PIAS4Q8N2W9 510 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 RAB40AQ8WXH6 277 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 OR6C1Q96RD1 312 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 MNTQ99583 582 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 PLEKHA1Q9HB21 404 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 SUSD2Q9UGT4 822 aa13.4□□□□□ -0.26
VIPAS39-202ENST00000343765 OR6C76A6NM76 312 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 PHYHO14832 338 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 PSMB1P20618 241 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 AP3S2P59780 193 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 YOD1Q5VVQ6 348 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 NDUFAF7Q7L592 441 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 ZNF679Q8IYX0 411 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 CARFQ8N187 725 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 PLPP7Q8NBV4 271 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 NXPE2Q96DL1 559 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 SEC22CQ9BRL7 303 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 ZNF768Q9H5H4 540 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 STEAP1Q9UHE8 339 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 CEP192Q8TEP8 1941 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 NUP210LQ5VU65 1888 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 H3BML4 177 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 ZNF432O94892 652 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 ECDO95905 644 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 WDR74Q6RFH5 385 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 TSSK4Q6SA08 328 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 ZNF574Q6ZN55 896 aaPredicted RBP13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 Q6ZTK2 550 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 LINC00346Q8IVM7 164 aa13.39□□□□□ -0.27
VIPAS39-202ENST00000343765 WDFY1Q8IWB7 410 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms