RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RNF32Q9H0A6 362 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 DEFB127Q9H1M4 99 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 BABAM2Q9NXR7 383 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 KCNG2Q9UJ96 466 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 MOKQ9UQ07 419 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 SF3B6Q9Y3B4 125 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 MRPS18CQ9Y3D5 142 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 NOX1Q9Y5S8 564 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 FKBP7Q9Y680 259 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 KIAA1549Q9HCM3 1950 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ACACAQ13085 2346 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 A6NIZ1 184 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 GJE1A6NN92 205 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 KLRC4-KLRK1H3BQV0 150 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 K7EM74 188 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SLC22A1O15245 554 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZNHIT1O43257 154 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 AKAP8O43823 692 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 AHCYL1O43865 530 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CEACAM4O75871 244 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 MT-ND5P03915 603 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PDGFAP04085 211 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PGA4P0DJD7 388 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PGA3P0DJD8 388 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 OR8G3PP0DMU2 310 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 NTF4P34130 210 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 EIF2S3P41091 472 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 LHX2P50458 406 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CLDN17P56750 224 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 RAP1BP61224 184 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 RAP1AP62834 184 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CSNK2A1P68400 391 aaPredicted RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 FABP5Q01469 135 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SLC17A1Q14916 467 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CDONQ4KMG0 1287 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CRTC2Q53ET0 693 aaPredicted RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 PHYHD1Q5SRE7 291 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ARL9Q6T311 187 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 IGFL2Q6UWQ7 119 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ESPNLQ6ZVH7 1005 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CREB3L2Q70SY1 520 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SPATC1Q76KD6 591 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 VASH1Q7L8A9 365 aaPredicted RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 CDC20BQ86Y33 519 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZIC4Q8N9L1 334 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 NOXO1Q8NFA2 376 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 OR2V1Q8NHB1 315 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 DYNC2LI1Q8TCX1 351 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SNX33Q8WV41 574 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 HSD17B8Q92506 261 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 UFD1Q92890 307 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SNX18Q96RF0 628 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 INTS14Q96SY0 518 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 TMED9Q9BVK6 235 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CEP295Q9C0D2 2601 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 DCSTAMPQ9H295 470 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 MARCH7Q9H992 704 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 INPP5EQ9NRR6 644 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ACOXLQ9NUZ1 547 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 GNG8Q9UK08 70 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PMF1-BGLAPU3KQ54 211 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SPTBN4Q9H254 2564 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 A0A1B0GTH9 108 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 LOC102725191A0A1B0GVB3 256 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZNF716A6NP11 495 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZNF670-ZNF695F2Z2N8 137 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZNF593O00488 134 aaPredicted RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 EIF1BO60739 113 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 RPP14O95059 124 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 SPARCP09486 303 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 GAAP10253 952 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ALOX5APP20292 161 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PSMA1P25786 263 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 CRABP1P29762 137 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CDAP32320 146 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PTGS2P35354 604 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SELENOPP49908 381 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 AGFG1P52594 562 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 CLDN18P56856 261 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CLRN1P58418 232 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 RAC3P60763 192 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ADAM8P78325 824 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SLC3A1Q07837 685 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ACSM1Q08AH1 577 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 HYAL4Q2M3T9 481 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZNF684Q5T5D7 378 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 FAM205BPQ63HN1 556 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 C22orf42Q6IC83 251 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 LRFN4Q6PJG9 635 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 CORO6Q6QEF8 472 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 LINC00346Q8IVM7 164 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SPACA3Q8IXA5 215 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 FAM109AQ8N4B1 249 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 TMEM178AQ8NBL3 297 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SLC26A10Q8NG04 563 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 OR9K2Q8NGE7 335 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 OR13C5Q8NGS8 318 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 OR6X1Q8NH79 312 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SNIP1Q8TAD8 396 aaKnown RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms