RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PGA3P0DJD8 388 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 FOSL1P15407 271 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 ALOX5APP20292 161 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 MEOX1P50221 254 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 CCL11P51671 97 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 ARG2P78540 354 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 TP53I3Q53FA7 332 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 DMKNQ6E0U4 476 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-202ENST00000338045 LINC00299Q6ZSB3 139 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 TMEM251Q8N6I4 163 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 OR6N2Q8NGY6 317 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 SIAEQ9HAT2 523 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 ST6GALNAC2Q9UJ37 374 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 KLK13Q9UKR3 277 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 TMEM14AQ9Y6G1 99 aa13.79□□□□□ -0.2
LIMS1-202ENST00000338045 IGKV1D-43A0A0B4J1Z2 117 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SLC35F4A4IF30 521 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 MAGEB4O15481 346 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 OGG1O15527 345 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 EFSO43281 561 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 PEX14O75381 377 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CEACAM4O75871 244 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 IGHG1P01857 330 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 HLA-DPB1P04440 258 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 GAAP10253 952 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 PSKH1P11801 424 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 POU3F2P20265 443 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 RFC3P40938 356 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SERPINB10P48595 397 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 TNFSF10P50591 281 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CLDN15P56746 228 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 FABP5Q01469 135 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 FMODQ06828 376 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 THEM4Q5T1C6 240 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 DPY19L4Q7Z388 723 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 KCTD20Q7Z5Y7 419 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 NOXO1Q8NFA2 376 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SLC26A10Q8NG04 563 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 OTOSQ8NHW6 89 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 ADAD1Q96M93 576 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 UCN2Q96RP3 112 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 TTTY10Q9BZA0 68 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CCDC59Q9P031 241 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 COA3Q9Y2R0 106 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 EIF1AYO14602 144 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 PHYHO14832 338 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SMAD9O15198 467 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 KHDRBS3O75525 346 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 ABHD16AO95870 558 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CELA3AP09093 270 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 MAGEA5P43359 124 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 STARP49675 285 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 GBX2P52951 348 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SUCLG1P53597 346 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CARD18P57730 90 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 ARPC4P59998 168 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SLC17A1Q14916 467 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 HIST3H3Q16695 136 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CCDC58Q4VC31 144 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 ZNF766Q5HY98 468 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 HBMQ6B0K9 141 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 PLEKHG7Q6ZR37 379 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CREB3L2Q70SY1 520 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 TMEM178AQ8NBL3 297 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 OR2V1Q8NHB1 315 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 FNDC8Q8TC99 324 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 RPS4Y2Q8TD47 263 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 PGLYRP3Q96LB9 341 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 RBP7Q96R05 134 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 SF3B5Q9BWJ5 86 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 CCDC86Q9H6F5 360 aaKnown RBP13.78□□□□□ -0.2
LIMS1-202ENST00000338045 KLHL9Q9P2J3 617 aa13.78□□□□□ -0.2
LIMS1-202ENST00000338045 IGHV3-15A0A0B4J1V0 119 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 ZNF593O00488 134 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-202ENST00000338045 SULT1C4O75897 302 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 HLA-DQA2P01906 255 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 CD1AP06126 327 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 ENPP1P22413 925 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 SIRPAP78324 504 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 PLGLB1Q02325 96 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 EGR3Q06889 387 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 CDK5R1Q15078 307 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 PCK2Q16822 640 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 DEFB109BQ30KR1 87 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 THOC7Q6I9Y2 204 aaKnown RBP13.77□□□□□ -0.21
LIMS1-202ENST00000338045 RPTNQ6XPR3 784 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 NCCRP1Q6ZVX7 275 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-202ENST00000338045 RNF166Q96A37 237 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-202ENST00000338045 TMED9Q9BVK6 235 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 ACOXLQ9NUZ1 547 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 MRM2Q9UI43 246 aaKnown RBP13.77□□□□□ -0.21
LIMS1-202ENST00000338045 LAMP5Q9UJQ1 280 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 GNG8Q9UK08 70 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 GRIP1Q9Y3R0 1128 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 KCNMB2Q9Y691 235 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 A3GALT2U3KPV4 340 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 ASPMQ8IZT6 3477 aa13.77□□□□□ -0.21
LIMS1-202ENST00000338045 FAM166BA8MTA8 275 aa13.76□□□□□ -0.21
LIMS1-202ENST00000338045 GABRPO00591 440 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms