RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ACTG2P63267 376 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 DBPQ10586 325 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 TPBGQ13641 420 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 DOC2BQ14184 412 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 RNPS1Q15287 305 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 STK11Q15831 433 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 CDONQ4KMG0 1287 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 TMPRSS11AQ6ZMR5 421 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 CDC20BQ86Y33 519 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ANKRD13BQ86YJ7 626 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF511Q8NB15 262 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 OR10H4Q8NGA5 316 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 MRPL48Q96GC5 212 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 OPALINQ96PE5 141 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF385AQ96PM9 386 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 INTS14Q96SY0 518 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ARHGAP9Q9BRR9 750 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 EMC6Q9BV81 110 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ALG8Q9BVK2 526 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 WDR76Q9H967 626 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 MRPL22Q9NWU5 206 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 EMC3Q9P0I2 261 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 KCNG2Q9UJ96 466 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 TP53TG5Q9Y2B4 290 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 TMEM14AQ9Y6G1 99 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 A0A1W2PQL4 384 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 DAPL1A0PJW8 107 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 C1QTNF9BB2RNN3 333 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 H3BSA7 217 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 PHYHO14832 338 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 GABARAPO95166 117 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 MRPL3P09001 348 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 C1QTNF9P0C862 333 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 FCGR2AP12318 317 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 LIPAP38571 399 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 NAA10P41227 235 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 CSNK1A1P48729 337 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 RGS6P49758 472 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 CLRN1P58418 232 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 FMODQ06828 376 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 RASGEF1BQ0VAM2 473 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 MED22Q15528 200 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 KCNMB1Q16558 191 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 ARMCX4Q5H9R4 360 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF684Q5T5D7 378 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 RIPPLY2Q5TAB7 128 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 LHFPL3Q86UP9 236 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 GLB1L2Q8IW92 636 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 C20orf196Q8IYI0 205 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 ALDH16A1Q8IZ83 802 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF454Q8N9F8 522 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 SYT14Q8NB59 555 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 OTOSQ8NHW6 89 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 HAVCR2Q8TDQ0 301 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 RAB2BQ8WUD1 216 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 ROBO4Q8WZ75 1007 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 EXTL1Q92935 676 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 SARAFQ96BY9 339 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 EXO5Q9H790 373 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 GLTPQ9NZD2 209 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 RSL24D1Q9UHA3 163 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 ENPP5Q9UJA9 477 aa13.24□□□□□ -0.29
CCDC88C-202ENST00000334448 IGKV1D-43A0A0B4J1Z2 117 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 OR6C65A6NJZ3 312 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 HSPB2A8KAH6 182 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF670-ZNF695F2Z2N8 137 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 MT-ND5P03915 603 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 CD53P19397 219 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ALOX5APP20292 161 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 CAMK2DQ13557 499 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 GPR50Q13585 617 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 HSPB2Q16082 182 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 PLEKHN1Q494U1 663 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 OR2G6Q5TZ20 316 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF324BQ6AW86 544 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 LRFN4Q6PJG9 635 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 LYPD4Q6UWN0 246 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 SLC16A12Q6ZSM3 486 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ATCAYQ86WG3 371 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 CLVS1Q8IUQ0 354 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ABHD3Q8WU67 409 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ZCCHC14Q8WYQ9 949 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 MCHR2Q969V1 340 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ISOC1Q96CN7 298 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 FUNDC2Q9BWH2 189 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 NDUFB11Q9NX14 153 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 CLCF1Q9UBD9 225 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 ZMIZ1Q9ULJ6 1067 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 COPS3Q9UNS2 423 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 COA3Q9Y2R0 106 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 UGT2A1Q9Y4X1 527 aa13.23□□□□□ -0.29
CCDC88C-202ENST00000334448 FAM171A2A8MVW0 826 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 CCRL2O00421 344 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 SLC43A1O75387 559 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 SULT1C4O75897 302 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 AQP8O94778 261 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 CD36P16671 472 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 CPEP16870 476 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 LAP3P28838 519 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 CD79BP40259 229 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms