RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CXCL10P02778 98 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 GAPDHP04406 335 aaKnown RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF14P17017 642 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF157P51786 506 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 C1orf100Q5SVJ3 147 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TMEM71Q6P5X7 295 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 PRSS54Q6PEW0 395 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 RNASE11Q8TAA1 199 aaKnown RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 RAB3CQ96E17 227 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 KXD1Q9BQD3 176 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 VN1R3Q9BXE9 311 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ATG5Q9H1Y0 275 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TSPAN10Q9H1Z9 355 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 POFUT1Q9H488 388 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 PARP11Q9NR21 331 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 C2orf42Q9NWW7 574 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 RCC2Q9P258 522 aaKnown RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 MRM2Q9UI43 246 aaKnown RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 DHDHQ9UQ10 334 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 SLC22A7Q9Y694 548 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TGOLN2O43493 480 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 PRKRAO75569 313 aaKnown RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ERCC1P07992 297 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 SLC35E2P0CK97 266 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 AGAP20933 346 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 S1PR1P21453 382 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ABCD3P28288 659 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 RAB5CP51148 216 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 DVL1P1P54792 670 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 STARD6P59095 220 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 C2orf76Q3KRA6 126 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 NKAIN2Q5VXU1 208 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF627Q7L945 461 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TMED6Q8WW62 240 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 MENTQ9BUN1 341 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 HDAC8Q9BY41 377 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 SEC61A2Q9H9S3 476 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 FLRT3Q9NZU0 649 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 HCSTQ9UBK5 93 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 OR10H1Q9Y4A9 318 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 NPIPB9F8W1W9 429 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 UBE2CO00762 179 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 NTN1O95631 604 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 IFNA17P01571 189 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TLE2Q04725 743 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF750Q32MQ0 723 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 SCGB2B2Q4G0G5 96 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 CORO6Q6QEF8 472 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 OR10R2Q8NGX6 335 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 NUDCD2Q8WVJ2 157 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 DMRTA2Q96SC8 542 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 NMES1Q9C002 83 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 BCO1Q9HAY6 547 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 DMRT1Q9Y5R6 373 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TBC1D3DA0A087WVF3 549 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 C5orf52A6NGY3 159 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 COLCA2A8K830 154 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 LINC00587B1AMM8 73 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TBC1D3LB9A6J9 549 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 EEF1E1-BLOC1S5C9J1V9 151 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 PRICKLE3O43900 615 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TBC1D3HP0C7X1 549 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 CD37P11049 281 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 S100A2P29034 98 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 CCKBRP32239 447 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 GABRA3P34903 492 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 DNASE1L1P49184 302 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF141Q15928 474 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 DEFB134Q4QY38 66 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TMEM244Q5VVB8 128 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TBC1D3CQ6IPX1 549 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF585AQ6P3V2 769 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 LEG1Q6P5S2 330 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 LILRA6Q6PI73 481 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 PEG10Q86TG7 708 aaKnown RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 TBC1D3Q8IZP1 549 aaPredicted RBP4.34□□□□□ -1.71
PTPN13-201ENST00000316707 ZNF511Q8NB15 262 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 OR8S1Q8NH09 359 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 PAQR8Q8TEZ7 354 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 SMARCD2Q92925 531 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 OR8B4Q96RC9 309 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 CRB3Q9BUF7 120 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 OPA3Q9H6K4 179 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 RAB18Q9NP72 206 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 FAM86C1Q9NVL1 165 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 GRHPRQ9UBQ7 328 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 RAB22AQ9UL26 194 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 OR1A2Q9Y585 309 aa4.34□□□□□ -1.71
PTPN13-201ENST00000316707 BLACEA4D250 179 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 RNASEK-C17orf49H0YIS7 233 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 PEX12O00623 359 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 CST4P01036 141 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 FBP1P09467 338 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 PTHLHP12272 177 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 ARHGDIBP52566 201 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 DUSP2Q05923 314 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 ECH1Q13011 328 aa4.34□□□□□ -1.72
PTPN13-201ENST00000316707 SURF2Q15527 256 aaPredicted RBP4.34□□□□□ -1.72
PTPN13-201ENST00000316707 SMAD2Q15796 467 aaKnown RBP4.34□□□□□ -1.72
PTPN13-201ENST00000316707 C2orf68Q2NKX9 166 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 278.6 ms