RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GSK3AP49840 483 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 CELF2-AS1Q8N7Q2 184 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 PLEKHF2Q9H8W4 249 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 BCO1Q9HAY6 547 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 OR52A1Q9UKL2 312 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 CLEC2LP0C7M8 214 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 SSTP61278 116 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 PRICKLE2Q7Z3G6 844 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 MAST2Q6P0Q8 1798 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 LOC100289279A0A1B0GTE1 492 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 TRIM23P36406 574 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 RAB13P51153 203 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 MAP2K6P52564 334 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 VHLLQ6RSH7 139 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 MKRN2Q9H000 416 aaKnown RBP17.59■□□□□ 0.41
UPF1-201ENST00000262803 RPS10P5Q9NQ39 176 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 DOK2O60496 412 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 RPS2P15880 293 aaKnown RBP17.58■□□□□ 0.41
UPF1-201ENST00000262803 SNRPGP62308 76 aaKnown RBP17.58■□□□□ 0.41
UPF1-201ENST00000262803 PYCR3Q53H96 274 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 PAN3Q58A45 887 aaKnown RBP17.58■□□□□ 0.41
UPF1-201ENST00000262803 ZNF546Q86UE3 836 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 GCNT2Q8N0V5 402 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 LILRB4Q8NHJ6 448 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 TERB2Q8NHR7 220 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 TMEM106AQ96A25 262 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 CCDC74AQ96AQ1 378 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 SELENOIQ9C0D9 397 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 SLC5A10A0PJK1 596 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 C20orf202A1L168 122 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 BET1O15155 118 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 IGLV3-25P01717 112 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 PPP3CBP16298 524 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 MMP11P24347 488 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 ZNF93P35789 620 aaPredicted RBP17.58■□□□□ 0.41
UPF1-201ENST00000262803 TMEM31Q5JXX7 168 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 ZNF836Q6ZNA1 936 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 CATSPERDQ86XM0 798 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 SLC35G3Q8N808 338 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 SLC16A11Q8NCK7 471 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 SLC25A21Q9BQT8 299 aaPredicted RBP17.58■□□□□ 0.41
UPF1-201ENST00000262803 TMEM43Q9BTV4 400 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 LAT2Q9GZY6 243 aa17.58■□□□□ 0.41
UPF1-201ENST00000262803 PAPLNO95428 1278 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 BMP1P13497 986 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 MCCD1P59942 119 aaPredicted RBP17.58■□□□□ 0.4
UPF1-201ENST00000262803 ARHGAP11BQ3KRB8 267 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 SH2D5Q6ZV89 423 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 FCRL1Q96LA6 429 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 ACKR4Q9NPB9 350 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 DHCR7Q9UBM7 475 aaKnown RBP17.58■□□□□ 0.4
UPF1-201ENST00000262803 FIGNL2A6NMB9 653 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 ATPAF1Q5TC12 328 aaPredicted RBP17.58■□□□□ 0.4
UPF1-201ENST00000262803 C9orf135Q5VTT2 229 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 BBS1Q8NFJ9 593 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 SEMA6DQ8NFY4 1073 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 SLC38A1Q9H2H9 487 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 CHST11Q9NPF2 352 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 ZNF355PQ9NSJ1 428 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 NPFFR2Q9Y5X5 522 aa17.58■□□□□ 0.4
UPF1-201ENST00000262803 IL2RAP01589 272 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 RFX2P48378 723 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 IHHQ14623 411 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 ESPNLQ6ZVH7 1005 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 PRSS35Q8N3Z0 413 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 PROCRQ9UNN8 238 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 ASB1Q9Y576 335 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 TIMM10BQ9Y5J6 103 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 LINC01387J3KSC0 135 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 DSCR3O14972 297 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 OR1D5P58170 312 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 SLC35A2P78381 396 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 TMPRSS7Q7RTY8 843 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 LYSMD2Q8IV50 215 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 C11orf54Q9H0W9 315 aaPredicted RBP17.57■□□□□ 0.4
UPF1-201ENST00000262803 A3GALT2U3KPV4 340 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 SYT13Q7L8C5 426 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 LGI3Q8N145 548 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 UBQLN3Q9H347 655 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 TRDV1A0A1B0GX56 115 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 NUPL2O15504 423 aaKnown RBP17.57■□□□□ 0.4
UPF1-201ENST00000262803 HOXB5P09067 269 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 SLC10A1Q14973 349 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 TMEM240Q5SV17 173 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 TAF1P21675 1872 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 SGCEO43556 437 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 RAF1P04049 648 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 RSPO2Q6UXX9 243 aaPredicted RBP17.57■□□□□ 0.4
UPF1-201ENST00000262803 SPEM1Q8N4L4 309 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 SLC37A2Q8TED4 501 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 SCPEP1Q9HB40 452 aa17.57■□□□□ 0.4
UPF1-201ENST00000262803 TMEM127O75204 238 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 GPR85P60893 370 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 SORDQ00796 357 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 SNTB1Q13884 538 aaKnown RBP17.56■□□□□ 0.4
UPF1-201ENST00000262803 KANSL1Q7Z3B3 1105 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 PDFQ9HBH1 243 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 TMEM200CA6NKL6 621 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 B3GALT4O96024 378 aa17.56■□□□□ 0.4
UPF1-201ENST00000262803 ELK1P19419 428 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms