RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SCAF4O95104 1147 aaKnown RBP12.4□□□□□ -0.43
LDLR-201ENST00000252444 TUBG1P23258 451 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 CPT2P23786 658 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 SSBP1Q04837 148 aaKnown RBP12.4□□□□□ -0.43
LDLR-201ENST00000252444 C1QTNF12Q5T7M4 302 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 TBPL2Q6SJ96 375 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 MOB3CQ70IA8 216 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 C8orf44Q96CB5 159 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 TUBG2Q9NRH3 451 aa12.4□□□□□ -0.43
LDLR-201ENST00000252444 TRABD2BA6NFA1 517 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 TVP23AA6NH52 213 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 DHHO43323 396 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 PIP5K1CO60331 668 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 RGS11O94810 467 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 FBXO45P0C2W1 286 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 IL3RAP26951 378 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ZNF117Q03924 483 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 RAB35Q15286 201 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ZNF679Q8IYX0 411 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 METTL8Q9H825 291 aaKnown RBP12.39□□□□□ -0.43
LDLR-201ENST00000252444 FAM166BA8MTA8 275 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 TIMM8AO60220 97 aaPredicted RBP12.39□□□□□ -0.43
LDLR-201ENST00000252444 CRTAPO75718 401 aaPredicted RBP12.39□□□□□ -0.43
LDLR-201ENST00000252444 AKR7A3O95154 331 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 CLUP10909 449 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 CLDN15P56746 228 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 LCN6P62502 163 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 MRGPREQ86SM8 312 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 HTRA1Q92743 480 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 MBOAT4Q96T53 435 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 MED18Q9BUE0 208 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 SYT4Q9H2B2 425 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ZNF286AQ9HBT8 521 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 FAM60AQ9NP50 221 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 R4GMQ9 66 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 TGM4P49221 684 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 SLC37A1P57057 533 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 TMPRSS3P57727 454 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ISL1P61371 349 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ZMYND11Q15326 602 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 CEBPEQ15744 281 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 C1orf87Q8N0U7 546 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 SEMA6DQ8NFY4 1073 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 C3orf49Q96BT1 292 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 BARD1Q99728 777 aaKnown RBP12.39□□□□□ -0.43
LDLR-201ENST00000252444 NRSN2Q9GZP1 204 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ICAM5Q9UMF0 924 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 H3BMQ9 156 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 H7C417 338 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 SEC14L2O76054 403 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 FTH1P19P0C7X4 201 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 CPEP16870 476 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 PTNP21246 168 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 PTGER1P34995 402 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 SCGB2B2Q4G0G5 96 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 GXYLT1Q4G148 440 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 KRTCAP3Q53RY4 240 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 OR5M10Q6IEU7 315 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 KIRREL2Q6UWL6 708 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 TIMD4Q96H15 378 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 ZNF681Q96N22 645 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 RANBP3Q9H6Z4 567 aaPredicted RBP12.39□□□□□ -0.43
LDLR-201ENST00000252444 STEAP1Q9UHE8 339 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 PFDN2Q9UHV9 154 aa12.39□□□□□ -0.43
LDLR-201ENST00000252444 C7orf72A4D263 438 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 C5orf51A6NDU8 294 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 A6NHS1 94 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 FCMRO60667 390 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 BCAS1O75363 584 aaPredicted RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 GABARAPO95166 117 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 CTXN2P0C2S0 81 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 STK11Q15831 433 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 S100A7AQ86SG5 101 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 C10orf35Q96D05 121 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 C7orf34Q96L11 122 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 OR10A4Q9H209 315 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 UGT2A1Q9Y4X1 527 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 INMT-MINDY4F8WBC2 141 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 YES1P07947 543 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 LSAMPQ13449 338 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 ODF4Q2M2E3 257 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 RNASE12Q5GAN4 147 aaKnown RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 SLC25A30Q5SVS4 291 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 FCRLBQ6BAA4 426 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 ZNF585AQ6P3V2 769 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 MSRB3Q8IXL7 192 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 OCIAD1Q9NX40 245 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 SCN5AQ14524 2016 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 A0A1B0GTL3 188 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 H2AFB2P0C5Z0 115 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 CEACAM1P13688 526 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 NTRK2Q16620 822 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 CLVS2Q5SYC1 327 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 ATAD3CQ5T2N8 411 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 BEND4Q6ZU67 534 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 YRDCQ86U90 279 aaKnown RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 GCDHQ92947 438 aaPredicted RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 OBP2BQ9NPH6 170 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 ZNF701Q9NV72 531 aaPredicted RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 RAC3P60763 192 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms