RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ICA1LQ8NDH6 482 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 NANPQ8TBE9 248 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 C22orf15Q8WYQ4 148 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 TMEM54Q969K7 222 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 MAELQ96JY0 434 aaKnown RBP16.54■□□□□ 0.24
CLN3-262ENST00000637699 OR52B2Q96RD2 323 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 WFDC6Q9BQY6 131 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 SPATA5L1Q9BVQ7 753 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 RNF121Q9H920 327 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 CDH20Q9HBT6 801 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 GLTPQ9NZD2 209 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 TESQ9UGI8 421 aaKnown RBP16.54■□□□□ 0.24
CLN3-262ENST00000637699 PCDHGB1Q9Y5G3 927 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 IGHV1-69-2A0A0G2JMI3 117 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 SLC22A23A1A5C7 686 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 UBDO15205 165 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 TPST2O60704 377 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 ARAFP10398 606 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 ZNF250P15622 560 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 CDH12P55289 794 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 CDK6Q00534 326 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 TEKQ02763 1124 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 GCNT6Q5T4J0 391 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 REEP3Q6NUK4 255 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 USP51Q70EK9 711 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 ZNF771Q7L3S4 317 aaPredicted RBP16.53■□□□□ 0.24
CLN3-262ENST00000637699 MAVSQ7Z434 540 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 C10orf111Q8N326 155 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 GOLGA6L1Q8N7Z2 621 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 OR5J2Q8NH18 312 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 C11orf40Q8WZ69 217 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 GTF3AQ92664 365 aaKnown RBP16.53■□□□□ 0.24
CLN3-262ENST00000637699 DECR2Q9NUI1 292 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 TMEM38BQ9NVV0 291 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 SLCO1C1Q9NYB5 712 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 WIPI2Q9Y4P8 454 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 CACNG2Q9Y698 323 aa16.53■□□□□ 0.24
CLN3-262ENST00000637699 IGLV3-9A0A075B6K5 115 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 CLDN25C9JDP6 229 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 J3QLI3 93 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 OR6A2O95222 327 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 IGHV2-5P01817 119 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 HOXB9P17482 250 aaPredicted RBP16.52■□□□□ 0.24
CLN3-262ENST00000637699 GLO1Q04760 184 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 TSTQ16762 297 aaKnown RBP16.52■□□□□ 0.24
CLN3-262ENST00000637699 MMEL1Q495T6 779 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 AGBL2Q5U5Z8 902 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 TMEM53Q6P2H8 277 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 LRFN4Q6PJG9 635 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 SLC35D2Q76EJ3 337 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 OR6X1Q8NH79 312 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 ZNF519Q8TB69 540 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 TMEM43Q9BTV4 400 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 C7orf69Q9H7B7 122 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 NKIRAS2Q9NYR9 191 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 SLC25A37Q9NYZ2 338 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 SLC13A4Q9UKG4 626 aa16.52■□□□□ 0.24
CLN3-262ENST00000637699 ARHGAP32A7KAX9 2087 aa16.52■□□□□ 0.23
CLN3-262ENST00000637699 FARS2O95363 451 aaKnown RBP16.51■□□□□ 0.23
CLN3-262ENST00000637699 MT-ATP6P00846 226 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 AQP1P29972 269 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 UCP2P55851 309 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 UBA52P62987 128 aaKnown RBP16.51■□□□□ 0.23
CLN3-262ENST00000637699 ZP4Q12836 540 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 MSRB3Q8IXL7 192 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 OR4K5Q8NGD3 323 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 ZNF566Q969W8 418 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 TIMD4Q96H15 378 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 DDX28Q9NUL7 540 aaKnown RBP16.51■□□□□ 0.23
CLN3-262ENST00000637699 SLAMF8Q9P0V8 285 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 PPIAL4AQ9Y536 164 aa16.51■□□□□ 0.23
CLN3-262ENST00000637699 PRORSD1PA6NEY8 169 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 TMPRSS2O15393 492 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 DHHO43323 396 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 ENTPD5O75356 428 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 PRSS23O95084 383 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 DRD4P21917 467 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 FPR2P25090 351 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 MELKQ14680 651 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 TBC1D28Q2M2D7 210 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 HFEQ30201 348 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 PRR31Q5SQ13 230 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 RANBP3LQ86VV4 465 aaPredicted RBP16.5■□□□□ 0.23
CLN3-262ENST00000637699 RAB1CQ92928 201 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 ZNF747Q9BV97 191 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 SAP30LQ9HAJ7 183 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 OPN4Q9UHM6 478 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 TRRAPQ9Y4A5 3859 aa16.5■□□□□ 0.23
CLN3-262ENST00000637699 RNF13O43567 381 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 PTHP01270 115 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 MT-ND5P03915 603 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 QDPRP09417 244 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 LCN2P80188 198 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 SCARB2Q14108 478 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 SLC36A2Q495M3 483 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 SWT1Q5T5J6 900 aaKnown RBP16.49■□□□□ 0.23
CLN3-262ENST00000637699 SLC16A14Q7RTX9 510 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 ARMC8Q8IUR7 673 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 OR1J2Q8NGS2 313 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 CCL17Q92583 94 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms