RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CPSF4O95639 269 aaKnown RBP12.16□□□□□ -0.46
CLN3-249ENST00000636685 PROCP04070 461 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 THRBP10828 461 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 CBLP22681 906 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 UQCRC2P22695 453 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 GRPRP30550 384 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 MPV17P39210 176 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 WHAMMP3Q1A5X7 153 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 MS4A18Q3C1V0 323 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 SPATA46Q5T0L3 261 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 Q6ZSV7 163 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 ANKRD46Q86W74 232 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 UEVLDQ8IX04 471 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 C1orf174Q8IYL3 243 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 OR1J1Q8NGS3 322 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 IPCEF1Q8WWN9 437 aaPredicted RBP12.16□□□□□ -0.46
CLN3-249ENST00000636685 SGCDQ92629 289 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 TAAR8Q969N4 342 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 PPP3R2Q96LZ3 170 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 TRNT1Q96Q11 434 aaKnown RBP12.16□□□□□ -0.46
CLN3-249ENST00000636685 SH3GL3Q99963 347 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 MTHFD2LQ9H903 347 aaPredicted RBP12.16□□□□□ -0.46
CLN3-249ENST00000636685 TCF7L2Q9NQB0 619 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 TMEM106BQ9NUM4 274 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 GPR45Q9Y5Y3 372 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 LOC102725191A0A1B0GVB3 256 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 EXOC1LA0A1B0GW35 172 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 PLSCR5A0PG75 271 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 CDHR4A6H8M9 788 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 FZD7O75084 574 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 MFN2O95140 757 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 SNAP29O95721 258 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 DBIP07108 87 aaKnown RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 NCF2P19878 526 aaPredicted RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 BTG1P62324 171 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 TBC1D28Q2M2D7 210 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 UGT3A2Q3SY77 523 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 ZNF836Q6ZNA1 936 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 LRRC74BQ6ZQY2 392 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 H1FNTQ75WM6 255 aaPredicted RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 SNX32Q86XE0 403 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 VRK2Q86Y07 508 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 SLC22A24Q8N4F4 322 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 ZSCAN4Q8NAM6 433 aaPredicted RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 SSMEM1Q8WWF3 244 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 RAB40AQ8WXH6 277 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 DACT3Q96B18 629 aaPredicted RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 WWC2-AS2Q96NR7 200 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 SSBP3Q9BWW4 388 aaPredicted RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 MARCOQ9UEW3 520 aaPredicted RBP12.15□□□□□ -0.46
CLN3-249ENST00000636685 LRCH1Q9Y2L9 728 aa12.15□□□□□ -0.46
CLN3-249ENST00000636685 A0A087WUV0 522 aaPredicted RBP12.14□□□□□ -0.47
CLN3-249ENST00000636685 CEACAM18A8MTB9 384 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 RNASET2O00584 256 aaKnown RBP12.14□□□□□ -0.47
CLN3-249ENST00000636685 DHHO43323 396 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 ATP8B1O43520 1251 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 IGHV4-59P01825 116 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 ADH4P08319 380 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 WNT2P09544 360 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 ARRB2P32121 409 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 CHI3L1P36222 383 aaPredicted RBP12.14□□□□□ -0.47
CLN3-249ENST00000636685 SMU1Q2TAY7 513 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 XKR7Q5GH72 579 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 C6orf136Q5SQH8 315 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 THEM4Q5T1C6 240 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 GPR157Q5UAW9 335 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 ZNF774Q6NX45 483 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 PIWIL3Q7Z3Z3 882 aaKnown RBP12.14□□□□□ -0.47
CLN3-249ENST00000636685 FNDC5Q8NAU1 212 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 ACMSDQ8TDX5 336 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 C3orf30Q96M34 536 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 RNF121Q9H920 327 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 NANOGQ9H9S0 305 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.14□□□□□ -0.47
CLN3-249ENST00000636685 DCDC2Q9UHG0 476 aa12.14□□□□□ -0.47
CLN3-249ENST00000636685 ZNF726A6NNF4 738 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 CD55P08174 381 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 G6PDP11413 515 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 H2AFXP16104 143 aaPredicted RBP12.13□□□□□ -0.47
CLN3-249ENST00000636685 FGF12P61328 243 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 TNFAIP6P98066 277 aaPredicted RBP12.13□□□□□ -0.47
CLN3-249ENST00000636685 EGR3Q06889 387 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 DBPQ10586 325 aaPredicted RBP12.13□□□□□ -0.47
CLN3-249ENST00000636685 ZNF718Q3SXZ3 478 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 TMEM53Q6P2H8 277 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 NHLRC1Q6VVB1 395 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 WDR88Q6ZMY6 472 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 CLIP4Q8N3C7 705 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 ZNF283Q8N7M2 679 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 OR1J2Q8NGS2 313 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 TBC1D15Q8TC07 691 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 MARS2Q96GW9 593 aaKnown RBP12.13□□□□□ -0.47
CLN3-249ENST00000636685 SIGLEC11Q96RL6 698 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 C1orf198Q9H425 327 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 C16orf95Q9H693 158 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 MSL2Q9HCI7 577 aa12.13□□□□□ -0.47
CLN3-249ENST00000636685 KIR2DS1A0A191URI9 304 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 TNFRSF13BO14836 293 aaPredicted RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 PLIN3O60664 434 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 MPIG6BO95866 241 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms